Results 101 - 120 of 562 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 9482 | 0.71 | 0.325971 |
Target: 5'- gCGGGGCCaCACccGCCU-GGCaCAGGCCu -3' miRNA: 3'- -GCUCCGGaGUGu-CGGGuCCG-GUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 67313 | 0.71 | 0.325971 |
Target: 5'- -cGGGCCacguccgcgCugAGCCCGGcCCAGGCCc -3' miRNA: 3'- gcUCCGGa--------GugUCGGGUCcGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 109294 | 0.71 | 0.325971 |
Target: 5'- gGAGGgaUCuCGGCCCcGGCCGcGGCCg -3' miRNA: 3'- gCUCCggAGuGUCGGGuCCGGU-CCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 43716 | 0.71 | 0.355062 |
Target: 5'- -cAGGuCCUgGCGgauuuccuccGCCCGGGCCAGGUg -3' miRNA: 3'- gcUCC-GGAgUGU----------CGGGUCCGGUCCGg -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 78816 | 0.71 | 0.333075 |
Target: 5'- gGAGGCC-CACGcGUCCAGGCa--GCCg -3' miRNA: 3'- gCUCCGGaGUGU-CGGGUCCGgucCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 163776 | 0.71 | 0.325267 |
Target: 5'- aGcAGGCCaUCcucuaguuaguauGCAGCCUGGGCCuuggcGGGCCa -3' miRNA: 3'- gC-UCCGG-AG-------------UGUCGGGUCCGG-----UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 128201 | 0.71 | 0.333075 |
Target: 5'- gGGGGCgC-CGCGGCgCCGGGCCAGacGCUc -3' miRNA: 3'- gCUCCG-GaGUGUCG-GGUCCGGUC--CGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 125905 | 0.71 | 0.362615 |
Target: 5'- uGGGGCCUCACcgAGCUggagagaaGGGUCcGGCCa -3' miRNA: 3'- gCUCCGGAGUG--UCGGg-------UCCGGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 62832 | 0.71 | 0.355062 |
Target: 5'- gGAacCCUgGCcGCCguGGCCAGGCCg -3' miRNA: 3'- gCUccGGAgUGuCGGguCCGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 123639 | 0.71 | 0.347621 |
Target: 5'- -cAGGaCCUCGuCA-CCCGGGCCagGGGCCa -3' miRNA: 3'- gcUCC-GGAGU-GUcGGGUCCGG--UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 140847 | 0.71 | 0.346883 |
Target: 5'- uGAGGCCaauaaauuggaagUCACAaaucaCCUGGGCUGGGCCu -3' miRNA: 3'- gCUCCGG-------------AGUGUc----GGGUCCGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 39813 | 0.71 | 0.340291 |
Target: 5'- aCGGcGGCCguugACGGCCCGgcGGCCucGGCCg -3' miRNA: 3'- -GCU-CCGGag--UGUCGGGU--CCGGu-CCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 124108 | 0.71 | 0.333075 |
Target: 5'- aGAGGCCUUu--GCCCucgcgccGGCC-GGCCa -3' miRNA: 3'- gCUCCGGAGuguCGGGu------CCGGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 118749 | 0.71 | 0.355062 |
Target: 5'- aCGAGGCCaacggCGCGGCuucgaCCuGGUgGGGCCc -3' miRNA: 3'- -GCUCCGGa----GUGUCG-----GGuCCGgUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 20912 | 0.71 | 0.332359 |
Target: 5'- gGAGGCC-CugAGUCC-GGCCgaccugcAGGCCc -3' miRNA: 3'- gCUCCGGaGugUCGGGuCCGG-------UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 122664 | 0.71 | 0.325971 |
Target: 5'- gGGGGCCcuccgCGCGGCgcucacCCAGGCgcgcCAGGCCc -3' miRNA: 3'- gCUCCGGa----GUGUCG------GGUCCG----GUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 64158 | 0.71 | 0.325971 |
Target: 5'- -aGGGCCUCGgAGUcugCCAGGCUGGGUg -3' miRNA: 3'- gcUCCGGAGUgUCG---GGUCCGGUCCGg -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 77319 | 0.71 | 0.323862 |
Target: 5'- -cGGGUCgCGCAuGCCCAGGCUgauggugaaggacgAGGCCg -3' miRNA: 3'- gcUCCGGaGUGU-CGGGUCCGG--------------UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 137719 | 0.71 | 0.34836 |
Target: 5'- gGAGGCCaggaccgagcggcggCGCGgcgguGCCCA-GCCGGGCCa -3' miRNA: 3'- gCUCCGGa--------------GUGU-----CGGGUcCGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 125358 | 0.71 | 0.355062 |
Target: 5'- gGAGGCCagggCGgccaAGCCCaaggAGGcCCAGGCCc -3' miRNA: 3'- gCUCCGGa---GUg---UCGGG----UCC-GGUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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