Results 81 - 100 of 562 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 146766 | 0.72 | 0.305339 |
Target: 5'- aGAGGCCgagUCACgcgacagguacaGGCCCGGuGCCAGccGCCc -3' miRNA: 3'- gCUCCGG---AGUG------------UCGGGUC-CGGUC--CGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 149071 | 0.72 | 0.305339 |
Target: 5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3' miRNA: 3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 145993 | 0.72 | 0.305339 |
Target: 5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3' miRNA: 3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 48580 | 0.72 | 0.305339 |
Target: 5'- cCGGGGCCUCGgGGgUCAGGg-AGGCCa -3' miRNA: 3'- -GCUCCGGAGUgUCgGGUCCggUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 60622 | 0.72 | 0.305339 |
Target: 5'- cCGAGGCCaUCAUGGCagaCGGGgcucugCAGGCCa -3' miRNA: 3'- -GCUCCGG-AGUGUCGg--GUCCg-----GUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 152149 | 0.72 | 0.305339 |
Target: 5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3' miRNA: 3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 158306 | 0.72 | 0.305339 |
Target: 5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3' miRNA: 3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 142915 | 0.72 | 0.305339 |
Target: 5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3' miRNA: 3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 98974 | 0.72 | 0.312103 |
Target: 5'- --cGGCaua--GGCCCAGGUCAGGCCc -3' miRNA: 3'- gcuCCGgagugUCGGGUCCGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 47744 | 0.72 | 0.312103 |
Target: 5'- cCGGGGCCUCcucGCGcGCCCuGGCgAguacGGCCu -3' miRNA: 3'- -GCUCCGGAG---UGU-CGGGuCCGgU----CCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 131455 | 0.72 | 0.31484 |
Target: 5'- uCGAGuuccuuaaauccauCCUCACGGgCCAGGCCccGGCCa -3' miRNA: 3'- -GCUCc-------------GGAGUGUCgGGUCCGGu-CCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 146637 | 0.72 | 0.31898 |
Target: 5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3' miRNA: 3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 149714 | 0.72 | 0.31898 |
Target: 5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3' miRNA: 3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 155870 | 0.72 | 0.31898 |
Target: 5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3' miRNA: 3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 157339 | 0.72 | 0.31898 |
Target: 5'- --cGGCCUgcuugCGCAGCCCGGcGCCcGGCg -3' miRNA: 3'- gcuCCGGA-----GUGUCGGGUC-CGGuCCGg -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 143559 | 0.72 | 0.31898 |
Target: 5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3' miRNA: 3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 39077 | 0.72 | 0.31898 |
Target: 5'- --cGGCCUC-CGGUCUggggaAGGCCAgGGCCa -3' miRNA: 3'- gcuCCGGAGuGUCGGG-----UCCGGU-CCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 69733 | 0.72 | 0.31898 |
Target: 5'- -aGGGCCagGCAGCCCAGGUaaAGGUUg -3' miRNA: 3'- gcUCCGGagUGUCGGGUCCGg-UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 152792 | 0.72 | 0.31898 |
Target: 5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3' miRNA: 3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 77319 | 0.71 | 0.323862 |
Target: 5'- -cGGGUCgCGCAuGCCCAGGCUgauggugaaggacgAGGCCg -3' miRNA: 3'- gcUCCGGaGUGU-CGGGUCCGG--------------UCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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