miRNA display CGI


Results 101 - 120 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 3' -62.9 NC_006146.1 + 163776 0.71 0.325267
Target:  5'- aGcAGGCCaUCcucuaguuaguauGCAGCCUGGGCCuuggcGGGCCa -3'
miRNA:   3'- gC-UCCGG-AG-------------UGUCGGGUCCGG-----UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 122664 0.71 0.325971
Target:  5'- gGGGGCCcuccgCGCGGCgcucacCCAGGCgcgcCAGGCCc -3'
miRNA:   3'- gCUCCGGa----GUGUCG------GGUCCG----GUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 67313 0.71 0.325971
Target:  5'- -cGGGCCacguccgcgCugAGCCCGGcCCAGGCCc -3'
miRNA:   3'- gcUCCGGa--------GugUCGGGUCcGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 109294 0.71 0.325971
Target:  5'- gGAGGgaUCuCGGCCCcGGCCGcGGCCg -3'
miRNA:   3'- gCUCCggAGuGUCGGGuCCGGU-CCGG- -5'
28990 3' -62.9 NC_006146.1 + 9482 0.71 0.325971
Target:  5'- gCGGGGCCaCACccGCCU-GGCaCAGGCCu -3'
miRNA:   3'- -GCUCCGGaGUGu-CGGGuCCG-GUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 64158 0.71 0.325971
Target:  5'- -aGGGCCUCGgAGUcugCCAGGCUGGGUg -3'
miRNA:   3'- gcUCCGGAGUgUCG---GGUCCGGUCCGg -5'
28990 3' -62.9 NC_006146.1 + 20912 0.71 0.332359
Target:  5'- gGAGGCC-CugAGUCC-GGCCgaccugcAGGCCc -3'
miRNA:   3'- gCUCCGGaGugUCGGGuCCGG-------UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 89690 0.71 0.333075
Target:  5'- aGGGGCCcggggaACGGCCUgggauacacGGGuCCGGGCCu -3'
miRNA:   3'- gCUCCGGag----UGUCGGG---------UCC-GGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 78816 0.71 0.333075
Target:  5'- gGAGGCC-CACGcGUCCAGGCa--GCCg -3'
miRNA:   3'- gCUCCGGaGUGU-CGGGUCCGgucCGG- -5'
28990 3' -62.9 NC_006146.1 + 124108 0.71 0.333075
Target:  5'- aGAGGCCUUu--GCCCucgcgccGGCC-GGCCa -3'
miRNA:   3'- gCUCCGGAGuguCGGGu------CCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 74968 0.71 0.333075
Target:  5'- cCGGGGCCaguaCAgAGUCCAGaaGCgGGGCCa -3'
miRNA:   3'- -GCUCCGGa---GUgUCGGGUC--CGgUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 128201 0.71 0.333075
Target:  5'- gGGGGCgC-CGCGGCgCCGGGCCAGacGCUc -3'
miRNA:   3'- gCUCCG-GaGUGUCG-GGUCCGGUC--CGG- -5'
28990 3' -62.9 NC_006146.1 + 39813 0.71 0.340291
Target:  5'- aCGGcGGCCguugACGGCCCGgcGGCCucGGCCg -3'
miRNA:   3'- -GCU-CCGGag--UGUCGGGU--CCGGu-CCGG- -5'
28990 3' -62.9 NC_006146.1 + 52818 0.71 0.340291
Target:  5'- aCGAGGCCgu---GCCCAGGaugcggaGGGCCg -3'
miRNA:   3'- -GCUCCGGaguguCGGGUCCgg-----UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 128274 0.71 0.340291
Target:  5'- uGAGGCC-CACGGCggcggccgagccCCAGGCUucGGUCa -3'
miRNA:   3'- gCUCCGGaGUGUCG------------GGUCCGGu-CCGG- -5'
28990 3' -62.9 NC_006146.1 + 140847 0.71 0.346883
Target:  5'- uGAGGCCaauaaauuggaagUCACAaaucaCCUGGGCUGGGCCu -3'
miRNA:   3'- gCUCCGG-------------AGUGUc----GGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 123639 0.71 0.347621
Target:  5'- -cAGGaCCUCGuCA-CCCGGGCCagGGGCCa -3'
miRNA:   3'- gcUCC-GGAGU-GUcGGGUCCGG--UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 137719 0.71 0.34836
Target:  5'- gGAGGCCaggaccgagcggcggCGCGgcgguGCCCA-GCCGGGCCa -3'
miRNA:   3'- gCUCCGGa--------------GUGU-----CGGGUcCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 118749 0.71 0.355062
Target:  5'- aCGAGGCCaacggCGCGGCuucgaCCuGGUgGGGCCc -3'
miRNA:   3'- -GCUCCGGa----GUGUCG-----GGuCCGgUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 125358 0.71 0.355062
Target:  5'- gGAGGCCagggCGgccaAGCCCaaggAGGcCCAGGCCc -3'
miRNA:   3'- gCUCCGGa---GUg---UCGGG----UCC-GGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.