miRNA display CGI


Results 121 - 140 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 3' -62.9 NC_006146.1 + 131069 0.71 0.355062
Target:  5'- --cGGCCcacugUGCGGCCgAGGCCgccGGGCCg -3'
miRNA:   3'- gcuCCGGa----GUGUCGGgUCCGG---UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 13711 0.71 0.355062
Target:  5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 16789 0.71 0.355062
Target:  5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 118749 0.71 0.355062
Target:  5'- aCGAGGCCaacggCGCGGCuucgaCCuGGUgGGGCCc -3'
miRNA:   3'- -GCUCCGGa----GUGUCG-----GGuCCGgUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 125358 0.71 0.355062
Target:  5'- gGAGGCCagggCGgccaAGCCCaaggAGGcCCAGGCCc -3'
miRNA:   3'- gCUCCGGa---GUg---UCGGG----UCC-GGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 29100 0.71 0.355062
Target:  5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 26022 0.71 0.355062
Target:  5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 19867 0.71 0.355062
Target:  5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 109392 0.71 0.362615
Target:  5'- gGAGGCCUCccugaucggACGGCCgucGGUCAgGGCCc -3'
miRNA:   3'- gCUCCGGAG---------UGUCGGgu-CCGGU-CCGG- -5'
28990 3' -62.9 NC_006146.1 + 125905 0.71 0.362615
Target:  5'- uGGGGCCUCACcgAGCUggagagaaGGGUCcGGCCa -3'
miRNA:   3'- gCUCCGGAGUG--UCGGg-------UCCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 117524 0.71 0.362615
Target:  5'- -uAGGUCUCAC-GCCUcucccucgGGGCCuGGGCCg -3'
miRNA:   3'- gcUCCGGAGUGuCGGG--------UCCGG-UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 45415 0.7 0.370279
Target:  5'- -uGGGCCagCGCgaGGCCCcGGCCGGGUUg -3'
miRNA:   3'- gcUCCGGa-GUG--UCGGGuCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 145954 0.7 0.370279
Target:  5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3'
miRNA:   3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 167183 0.7 0.370279
Target:  5'- gGAGGCCggCGCGcGCCCGGGgucCCGGGg- -3'
miRNA:   3'- gCUCCGGa-GUGU-CGGGUCC---GGUCCgg -5'
28990 3' -62.9 NC_006146.1 + 168115 0.7 0.370279
Target:  5'- gGAGGCCggCGCGcGCCCGGGgucCCGGGg- -3'
miRNA:   3'- gCUCCGGa-GUGU-CGGGUCC---GGUCCgg -5'
28990 3' -62.9 NC_006146.1 + 155188 0.7 0.370279
Target:  5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3'
miRNA:   3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 158267 0.7 0.370279
Target:  5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3'
miRNA:   3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 149032 0.7 0.370279
Target:  5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3'
miRNA:   3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 152110 0.7 0.370279
Target:  5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3'
miRNA:   3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 142876 0.7 0.370279
Target:  5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3'
miRNA:   3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.