Results 141 - 160 of 562 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 152110 | 0.7 | 0.370279 |
Target: 5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3' miRNA: 3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 53019 | 0.7 | 0.370279 |
Target: 5'- -uGGGCCUCACgcGGCU--GGCCGcGGCCg -3' miRNA: 3'- gcUCCGGAGUG--UCGGguCCGGU-CCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 158267 | 0.7 | 0.370279 |
Target: 5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3' miRNA: 3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 117233 | 0.7 | 0.37727 |
Target: 5'- -cGGGCUUCcuggaaaGCGGCCgGGGCCAGGg- -3' miRNA: 3'- gcUCCGGAG-------UGUCGGgUCCGGUCCgg -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 123125 | 0.7 | 0.378052 |
Target: 5'- aCGGGGCUUUcagACGGCCCuggAGGCCGuacucGCCa -3' miRNA: 3'- -GCUCCGGAG---UGUCGGG---UCCGGUc----CGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 55396 | 0.7 | 0.378052 |
Target: 5'- cCGAGGCCagcaUCACGGCgUAGucgcccGCCGcGGCCu -3' miRNA: 3'- -GCUCCGG----AGUGUCGgGUC------CGGU-CCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 130313 | 0.7 | 0.378052 |
Target: 5'- gGAGGUUcgGCcGCCCAgGGCCAGGaCCu -3' miRNA: 3'- gCUCCGGagUGuCGGGU-CCGGUCC-GG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 128058 | 0.7 | 0.378052 |
Target: 5'- gCGuGGGCCUgGCGGCCCucgAGGCCcugauccuGGUCu -3' miRNA: 3'- -GC-UCCGGAgUGUCGGG---UCCGGu-------CCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 77217 | 0.7 | 0.378052 |
Target: 5'- uGGGGCaCUUcaACAGUCCGGGUCuaucugacGGCCa -3' miRNA: 3'- gCUCCG-GAG--UGUCGGGUCCGGu-------CCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 44766 | 0.7 | 0.378052 |
Target: 5'- uCGGGGCCcgGCGGgcggggaaCCCAGGCCGGGg- -3' miRNA: 3'- -GCUCCGGagUGUC--------GGGUCCGGUCCgg -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 159277 | 0.7 | 0.378052 |
Target: 5'- aCGcGGGCCUCGgGGCCCucgcagucGGCaaacagGGGCCa -3' miRNA: 3'- -GC-UCCGGAGUgUCGGGu-------CCGg-----UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 168482 | 0.7 | 0.378052 |
Target: 5'- --cGGCCUCAC-GUCCAcGGUCgggGGGCCg -3' miRNA: 3'- gcuCCGGAGUGuCGGGU-CCGG---UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 115386 | 0.7 | 0.378052 |
Target: 5'- gGAGGCCcuggccgcUCgcgugcaggagGCAGCUgGcGGCCGGGCCu -3' miRNA: 3'- gCUCCGG--------AG-----------UGUCGGgU-CCGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 14758 | 0.7 | 0.378052 |
Target: 5'- aCGAGGUCagGCAGgCgGGGCuCGGGCa -3' miRNA: 3'- -GCUCCGGagUGUCgGgUCCG-GUCCGg -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 31305 | 0.7 | 0.381192 |
Target: 5'- gGAGGCCUuCuccuccucgccccccGCAGCCUcauuGGGCuuaCAGGCCu -3' miRNA: 3'- gCUCCGGA-G---------------UGUCGGG----UCCG---GUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 4365 | 0.7 | 0.385935 |
Target: 5'- aCGuGGCC--ACGGCCCcgcGGGCucccCAGGCCg -3' miRNA: 3'- -GCuCCGGagUGUCGGG---UCCG----GUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 41859 | 0.7 | 0.385935 |
Target: 5'- --cGGCgUCugGGCCCAGcUCGGGCUg -3' miRNA: 3'- gcuCCGgAGugUCGGGUCcGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 123348 | 0.7 | 0.385935 |
Target: 5'- aGGGGUCUCGCcgagggAGCUCuGGCgCuGGCCg -3' miRNA: 3'- gCUCCGGAGUG------UCGGGuCCG-GuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 154983 | 0.7 | 0.391517 |
Target: 5'- --cGGCCUCGCgcagGGCCCGgcacagaaguugcuGGCUcgAGGCCa -3' miRNA: 3'- gcuCCGGAGUG----UCGGGU--------------CCGG--UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 72343 | 0.7 | 0.393925 |
Target: 5'- uGAGGCCuUCGCuugGGCCCuGGaCC-GGCUg -3' miRNA: 3'- gCUCCGG-AGUG---UCGGGuCC-GGuCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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