miRNA display CGI


Results 101 - 120 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 3' -62.9 NC_006146.1 + 142142 0.66 0.601969
Target:  5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3'
miRNA:   3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 75160 0.66 0.600998
Target:  5'- cCGGGGCCaaCAcCAGCCCcccccacuGGGCauuuuguUAGGCCc -3'
miRNA:   3'- -GCUCCGGa-GU-GUCGGG--------UCCG-------GUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 57306 0.66 0.600998
Target:  5'- gGAGGCCUuuguggaccuggaCGCguGGCUCucuggGGGCgGGGCCc -3'
miRNA:   3'- gCUCCGGA-------------GUG--UCGGG-----UCCGgUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 62722 0.66 0.592262
Target:  5'- --cGGCCgugUACAuGCCCAGgauaGCCGGaGCCc -3'
miRNA:   3'- gcuCCGGa--GUGU-CGGGUC----CGGUC-CGG- -5'
28990 3' -62.9 NC_006146.1 + 147113 0.66 0.592262
Target:  5'- uGGGGCUcaGCGGgcCCCAGacGCgCAGGCCg -3'
miRNA:   3'- gCUCCGGagUGUC--GGGUC--CG-GUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 102862 0.66 0.592262
Target:  5'- aGGGcaGCCgcCACcuGGUCguGGCCGGGCCc -3'
miRNA:   3'- gCUC--CGGa-GUG--UCGGguCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 82031 0.66 0.592262
Target:  5'- gGAGuugcaGCCacaACAGcCCCAGGCCccGCCg -3'
miRNA:   3'- gCUC-----CGGag-UGUC-GGGUCCGGucCGG- -5'
28990 3' -62.9 NC_006146.1 + 148143 0.66 0.592262
Target:  5'- -uGGGCUucgugcuggUCAgGGCCCGGGUCuucucuacGGCCa -3'
miRNA:   3'- gcUCCGG---------AGUgUCGGGUCCGGu-------CCGG- -5'
28990 3' -62.9 NC_006146.1 + 23901 0.66 0.591293
Target:  5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3'
miRNA:   3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 17745 0.66 0.591293
Target:  5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3'
miRNA:   3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 137015 0.66 0.591293
Target:  5'- gGuAGGCCgggCACAcCCCggggaggAGGCCGGGUg -3'
miRNA:   3'- gC-UCCGGa--GUGUcGGG-------UCCGGUCCGg -5'
28990 3' -62.9 NC_006146.1 + 26978 0.66 0.591293
Target:  5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3'
miRNA:   3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 20823 0.66 0.591293
Target:  5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3'
miRNA:   3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 14667 0.66 0.591293
Target:  5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3'
miRNA:   3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 157781 0.66 0.591293
Target:  5'- -uGGGCCcgGgAGCCCccguccacaaacaGGGCCAGGUCc -3'
miRNA:   3'- gcUCCGGagUgUCGGG-------------UCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 26679 0.67 0.582581
Target:  5'- -cGGGCCUgucagACAGCCCugucuaGGGCCGGGa- -3'
miRNA:   3'- gcUCCGGAg----UGUCGGG------UCCGGUCCgg -5'
28990 3' -62.9 NC_006146.1 + 17445 0.67 0.582581
Target:  5'- -cGGGCCUgucagACAGCCCugucuaGGGCCGGGa- -3'
miRNA:   3'- gcUCCGGAg----UGUCGGG------UCCGGUCCgg -5'
28990 3' -62.9 NC_006146.1 + 138069 0.67 0.582581
Target:  5'- gGAGGCCgccgCAaGGaCgCCGGGCC-GGCUg -3'
miRNA:   3'- gCUCCGGa---GUgUC-G-GGUCCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 14367 0.67 0.582581
Target:  5'- -cGGGCCUgucagACAGCCCugucuaGGGCCGGGa- -3'
miRNA:   3'- gcUCCGGAg----UGUCGGG------UCCGGUCCgg -5'
28990 3' -62.9 NC_006146.1 + 34239 0.67 0.582581
Target:  5'- gGAGGCCgccgCAaGGaCgCCGGGCC-GGCUg -3'
miRNA:   3'- gCUCCGGa---GUgUC-G-GGUCCGGuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.