Results 121 - 140 of 562 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 138069 | 0.67 | 0.582581 |
Target: 5'- gGAGGCCgccgCAaGGaCgCCGGGCC-GGCUg -3' miRNA: 3'- gCUCCGGa---GUgUC-G-GGUCCGGuCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 34239 | 0.67 | 0.582581 |
Target: 5'- gGAGGCCgccgCAaGGaCgCCGGGCC-GGCUg -3' miRNA: 3'- gCUCCGGa---GUgUC-G-GGUCCGGuCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 62410 | 0.67 | 0.582581 |
Target: 5'- aGAGGaCCUCGuCGG---AGGCCAGGCa -3' miRNA: 3'- gCUCC-GGAGU-GUCgggUCCGGUCCGg -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 53775 | 0.67 | 0.582581 |
Target: 5'- gGAGGUCUCGCcggacgagGGCCUcGGCCcgcgcGGCg -3' miRNA: 3'- gCUCCGGAGUG--------UCGGGuCCGGu----CCGg -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 114136 | 0.67 | 0.582581 |
Target: 5'- gGAGGCCUgCGCGuGCuCCGcGaUCAGGCCc -3' miRNA: 3'- gCUCCGGA-GUGU-CG-GGUcC-GGUCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 11419 | 0.67 | 0.582581 |
Target: 5'- aGA-GCCU-GCAGgaCCAGGCCAagguGGCCa -3' miRNA: 3'- gCUcCGGAgUGUCg-GGUCCGGU----CCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 167155 | 0.67 | 0.582581 |
Target: 5'- aGGGGaCC-CAC--CCCGGGCUgaaGGGCCa -3' miRNA: 3'- gCUCC-GGaGUGucGGGUCCGG---UCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 70840 | 0.67 | 0.582581 |
Target: 5'- --cGGCCUCAucuucCAGCCCucuucccGGCgCAGGUg -3' miRNA: 3'- gcuCCGGAGU-----GUCGGGu------CCG-GUCCGg -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 118981 | 0.67 | 0.582581 |
Target: 5'- cCGGGGCCgcccgUCGguGCCUcggAGGCCcccGCCg -3' miRNA: 3'- -GCUCCGG-----AGUguCGGG---UCCGGuc-CGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 74708 | 0.67 | 0.582581 |
Target: 5'- gGGGGgCUUAC-GCUCAgGGCCagaaAGGCCc -3' miRNA: 3'- gCUCCgGAGUGuCGGGU-CCGG----UCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 85916 | 0.67 | 0.582581 |
Target: 5'- gCGGGGCUUUACc-CUgGGGCCuggauGGCCu -3' miRNA: 3'- -GCUCCGGAGUGucGGgUCCGGu----CCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 20523 | 0.67 | 0.582581 |
Target: 5'- -cGGGCCUgucagACAGCCCugucuaGGGCCGGGa- -3' miRNA: 3'- gcUCCGGAg----UGUCGGG------UCCGGUCCgg -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 96163 | 0.67 | 0.582581 |
Target: 5'- gGAGGCUggcUCACugGGUCCcuccaGGGCCuuucuGGCCc -3' miRNA: 3'- gCUCCGG---AGUG--UCGGG-----UCCGGu----CCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 73508 | 0.67 | 0.580649 |
Target: 5'- gCGGGGUCacgCGCAGgCUuacuuuuugcauGGCCAGGCUc -3' miRNA: 3'- -GCUCCGGa--GUGUCgGGu-----------CCGGUCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 156027 | 0.67 | 0.572933 |
Target: 5'- uGGGGCCUCGgagGGCCUggaGGGCUAGaGUg -3' miRNA: 3'- gCUCCGGAGUg--UCGGG---UCCGGUC-CGg -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 108379 | 0.67 | 0.572933 |
Target: 5'- gGAGaCCgagacagaacaCGCAGCCCcccaGGGCCAGGUg -3' miRNA: 3'- gCUCcGGa----------GUGUCGGG----UCCGGUCCGg -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 110088 | 0.67 | 0.572933 |
Target: 5'- aGAGGUgguugacaACGGUCCGGaCCAGGCCc -3' miRNA: 3'- gCUCCGgag-----UGUCGGGUCcGGUCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 97858 | 0.67 | 0.572933 |
Target: 5'- gGGGGCCgccgacCCCGGGCCguggaacgaGGGCCu -3' miRNA: 3'- gCUCCGGagugucGGGUCCGG---------UCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 44399 | 0.67 | 0.572933 |
Target: 5'- uGGGGCCgggCACGGCgCCuuccucgagGGGCUcccgGGGUCu -3' miRNA: 3'- gCUCCGGa--GUGUCG-GG---------UCCGG----UCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 143715 | 0.67 | 0.572933 |
Target: 5'- uGGGGCCUCGgagGGCCUggaGGGCUAGaGUg -3' miRNA: 3'- gCUCCGGAGUg--UCGGG---UCCGGUC-CGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home