miRNA display CGI


Results 61 - 80 of 562 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 3' -62.9 NC_006146.1 + 155062 0.7 0.408575
Target:  5'- gGAGGUCUCuauccaaucgcuCGGCUCGauGCCGGGCCa -3'
miRNA:   3'- gCUCCGGAGu-----------GUCGGGUc-CGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 154983 0.7 0.391517
Target:  5'- --cGGCCUCGCgcagGGCCCGgcacagaaguugcuGGCUcgAGGCCa -3'
miRNA:   3'- gcuCCGGAGUG----UCGGGU--------------CCGG--UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 154647 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 154454 0.66 0.601969
Target:  5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3'
miRNA:   3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 154363 0.68 0.525368
Target:  5'- --uGGCCUCugGGgccaCCCGGGCUgccgGGGUCc -3'
miRNA:   3'- gcuCCGGAGugUC----GGGUCCGG----UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 153305 0.74 0.227514
Target:  5'- -cAGGCacca-GGCCCGGGCCAGGUCg -3'
miRNA:   3'- gcUCCGgagugUCGGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 152949 0.67 0.572933
Target:  5'- uGGGGCCUCGgagGGCCUggaGGGCUAGaGUg -3'
miRNA:   3'- gCUCCGGAGUg--UCGGG---UCCGGUC-CGg -5'
28990 3' -62.9 NC_006146.1 + 152792 0.72 0.31898
Target:  5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3'
miRNA:   3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 152435 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5'
28990 3' -62.9 NC_006146.1 + 152149 0.72 0.305339
Target:  5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3'
miRNA:   3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 152110 0.7 0.370279
Target:  5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3'
miRNA:   3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 152023 0.69 0.46153
Target:  5'- --uGGUCUCGCuugcuGGCCCcaauGGCCgcGGGCCu -3'
miRNA:   3'- gcuCCGGAGUG-----UCGGGu---CCGG--UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 151681 0.68 0.470409
Target:  5'- uGAGGacggcaaaCUCAC-GUCCAGGCCcugAGGCg -3'
miRNA:   3'- gCUCCg-------GAGUGuCGGGUCCGG---UCCGg -5'
28990 3' -62.9 NC_006146.1 + 151569 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 151376 0.66 0.601969
Target:  5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3'
miRNA:   3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 151285 0.68 0.525368
Target:  5'- --uGGCCUCugGGgccaCCCGGGCUgccgGGGUCc -3'
miRNA:   3'- gcuCCGGAGugUC----GGGUCCGG----UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 150316 0.68 0.516026
Target:  5'- uCGuAGuCCUC---GCCCGGGCgCAGGCCg -3'
miRNA:   3'- -GC-UCcGGAGuguCGGGUCCG-GUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 149871 0.67 0.572933
Target:  5'- uGGGGCCUCGgagGGCCUggaGGGCUAGaGUg -3'
miRNA:   3'- gCUCCGGAGUg--UCGGG---UCCGGUC-CGg -5'
28990 3' -62.9 NC_006146.1 + 149714 0.72 0.31898
Target:  5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3'
miRNA:   3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 149357 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.