miRNA display CGI


Results 81 - 100 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 3' -62.9 NC_006146.1 + 149071 0.72 0.305339
Target:  5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3'
miRNA:   3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 149032 0.7 0.370279
Target:  5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3'
miRNA:   3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 148945 0.69 0.46153
Target:  5'- --uGGUCUCGCuugcuGGCCCcaauGGCCgcGGGCCu -3'
miRNA:   3'- gcuCCGGAGUG-----UCGGGu---CCGG--UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 148491 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 148298 0.66 0.601969
Target:  5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3'
miRNA:   3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 148207 0.68 0.525368
Target:  5'- --uGGCCUCugGGgccaCCCGGGCUgccgGGGUCc -3'
miRNA:   3'- gcuCCGGAGugUC----GGGUCCGG----UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 148143 0.66 0.592262
Target:  5'- -uGGGCUucgugcuggUCAgGGCCCGGGUCuucucuacGGCCa -3'
miRNA:   3'- gcUCCGG---------AGUgUCGGGUCCGGu-------CCGG- -5'
28990 3' -62.9 NC_006146.1 + 147743 0.66 0.632163
Target:  5'- -cGGGCCgcgagcgacucugugCAagcgaAGCCCAGGCUcccGGCCu -3'
miRNA:   3'- gcUCCGGa--------------GUg----UCGGGUCCGGu--CCGG- -5'
28990 3' -62.9 NC_006146.1 + 147419 0.69 0.444043
Target:  5'- gCGA-GCC-CAcCAGCCCGuaccuGGCCAcGGCCa -3'
miRNA:   3'- -GCUcCGGaGU-GUCGGGU-----CCGGU-CCGG- -5'
28990 3' -62.9 NC_006146.1 + 147113 0.66 0.592262
Target:  5'- uGGGGCUcaGCGGgcCCCAGacGCgCAGGCCg -3'
miRNA:   3'- gCUCCGGagUGUC--GGGUC--CG-GUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 146827 0.8 0.08751
Target:  5'- gCGAGGCCgCGCcagcguagAGCCCGGGCCuggcucgGGGCCg -3'
miRNA:   3'- -GCUCCGGaGUG--------UCGGGUCCGG-------UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 146793 0.67 0.572933
Target:  5'- uGGGGCCUCGgagGGCCUggaGGGCUAGaGUg -3'
miRNA:   3'- gCUCCGGAGUg--UCGGG---UCCGGUC-CGg -5'
28990 3' -62.9 NC_006146.1 + 146766 0.72 0.305339
Target:  5'- aGAGGCCgagUCACgcgacagguacaGGCCCGGuGCCAGccGCCc -3'
miRNA:   3'- gCUCCGG---AGUG------------UCGGGUC-CGGUC--CGG- -5'
28990 3' -62.9 NC_006146.1 + 146637 0.72 0.31898
Target:  5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3'
miRNA:   3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 146279 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5'
28990 3' -62.9 NC_006146.1 + 145993 0.72 0.305339
Target:  5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3'
miRNA:   3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 145954 0.7 0.370279
Target:  5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3'
miRNA:   3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 145867 0.69 0.46153
Target:  5'- --uGGUCUCGCuugcuGGCCCcaauGGCCgcGGGCCu -3'
miRNA:   3'- gcuCCGGAGUG-----UCGGGu---CCGG--UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 145413 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 145220 0.66 0.601969
Target:  5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3'
miRNA:   3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.