miRNA display CGI


Results 121 - 140 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 3' -62.9 NC_006146.1 + 137777 0.69 0.417694
Target:  5'- gCGGGGCa--GCGGCCCGGcgaacccGCCGgcGGCCa -3'
miRNA:   3'- -GCUCCGgagUGUCGGGUC-------CGGU--CCGG- -5'
28990 3' -62.9 NC_006146.1 + 137719 0.71 0.34836
Target:  5'- gGAGGCCaggaccgagcggcggCGCGgcgguGCCCA-GCCGGGCCa -3'
miRNA:   3'- gCUCCGGa--------------GUGU-----CGGGUcCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 137654 0.69 0.417694
Target:  5'- gCGGGGCa--GCGGCCCGGcggacccGCCGgcGGCCa -3'
miRNA:   3'- -GCUCCGgagUGUCGGGUC-------CGGU--CCGG- -5'
28990 3' -62.9 NC_006146.1 + 137611 0.68 0.470409
Target:  5'- gCGGcGGCgcagCGguGCCCA-GCCGGGCCa -3'
miRNA:   3'- -GCU-CCGga--GUguCGGGUcCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 137573 0.66 0.639962
Target:  5'- -cGGGUC-CGCugcccgguccuggAGCUCGGGCCggGGGCCg -3'
miRNA:   3'- gcUCCGGaGUG-------------UCGGGUCCGG--UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 137532 0.67 0.541393
Target:  5'- gCGGGGCa--GCGGCCCGgcggacccaccggcGGCCAcccGGCUg -3'
miRNA:   3'- -GCUCCGgagUGUCGGGU--------------CCGGU---CCGG- -5'
28990 3' -62.9 NC_006146.1 + 137513 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 137489 0.68 0.470409
Target:  5'- gCGGcGGCgcagCGguGCCCAGGC-GGGCCa -3'
miRNA:   3'- -GCU-CCGga--GUguCGGGUCCGgUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 137420 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 137327 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 137234 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 137141 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 137048 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 137015 0.66 0.591293
Target:  5'- gGuAGGCCgggCACAcCCCggggaggAGGCCGGGUg -3'
miRNA:   3'- gC-UCCGGa--GUGUcGGG-------UCCGGUCCGg -5'
28990 3' -62.9 NC_006146.1 + 136955 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 136862 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 136769 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 136584 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 136491 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 136398 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.