miRNA display CGI


Results 141 - 160 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 3' -62.9 NC_006146.1 + 136305 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 136212 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 136119 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 136026 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 135933 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 135840 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 135747 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 135655 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 135562 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 135469 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 135376 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 135283 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 135190 0.68 0.523494
Target:  5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3'
miRNA:   3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 132540 0.69 0.452741
Target:  5'- aCGuGGCCUCgaaGGCCuCGGGUCGGaGCg -3'
miRNA:   3'- -GCuCCGGAGug-UCGG-GUCCGGUC-CGg -5'
28990 3' -62.9 NC_006146.1 + 132221 0.72 0.279408
Target:  5'- -cAGGCCUUuaagGCAGCUCucgcGGCCGGGCa -3'
miRNA:   3'- gcUCCGGAG----UGUCGGGu---CCGGUCCGg -5'
28990 3' -62.9 NC_006146.1 + 131934 0.66 0.631188
Target:  5'- gCGAGaGUCUgGgGGCCCAcccggauGCCAaGGCCa -3'
miRNA:   3'- -GCUC-CGGAgUgUCGGGUc------CGGU-CCGG- -5'
28990 3' -62.9 NC_006146.1 + 131842 0.69 0.444043
Target:  5'- gGAGGCCggcgaccauUCACagGGCCCcuGCCugcuGGCCc -3'
miRNA:   3'- gCUCCGG---------AGUG--UCGGGucCGGu---CCGG- -5'
28990 3' -62.9 NC_006146.1 + 131588 0.69 0.444043
Target:  5'- gGAGGCCa-GCcgAGCCCAGuacaCAGGCCu -3'
miRNA:   3'- gCUCCGGagUG--UCGGGUCcg--GUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 131455 0.72 0.31484
Target:  5'- uCGAGuuccuuaaauccauCCUCACGGgCCAGGCCccGGCCa -3'
miRNA:   3'- -GCUCc-------------GGAGUGUCgGGUCCGGu-CCGG- -5'
28990 3' -62.9 NC_006146.1 + 131069 0.71 0.355062
Target:  5'- --cGGCCcacugUGCGGCCgAGGCCgccGGGCCg -3'
miRNA:   3'- gcuCCGGa----GUGUCGGgUCCGG---UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.