miRNA display CGI


Results 61 - 80 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 3' -62.9 NC_006146.1 + 158820 0.73 0.267114
Target:  5'- -cAGGCa-CACGGCCgGGGCCcGGCCc -3'
miRNA:   3'- gcUCCGgaGUGUCGGgUCCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 56529 0.72 0.279408
Target:  5'- --cGGCCaUCAgCAGCUgacgcgucacgCGGGCCAGGCCc -3'
miRNA:   3'- gcuCCGG-AGU-GUCGG-----------GUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 24924 1.1 0.000681
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCc -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 80926 0.78 0.11565
Target:  5'- uCGA-GCCUCcCGGCCCA-GCCAGGCCc -3'
miRNA:   3'- -GCUcCGGAGuGUCGGGUcCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 78585 0.77 0.147667
Target:  5'- -cAGGCCgggCccgccccccagcaGCAGcCCCAGGCCGGGCCc -3'
miRNA:   3'- gcUCCGGa--G-------------UGUC-GGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 78765 0.77 0.147667
Target:  5'- -cAGGCCgggCccgccccccagcaGCAGcCCCAGGCCGGGCCc -3'
miRNA:   3'- gcUCCGGa--G-------------UGUC-GGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 98334 0.74 0.22228
Target:  5'- aCGGGGCCgggCGCGGCCCGucccGGuCCAGGagaCa -3'
miRNA:   3'- -GCUCCGGa--GUGUCGGGU----CC-GGUCCg--G- -5'
28990 3' -62.9 NC_006146.1 + 69862 0.73 0.249497
Target:  5'- gGAGGUCgggCGuagaGGCCCAGGuCCAcGGCCg -3'
miRNA:   3'- gCUCCGGa--GUg---UCGGGUCC-GGU-CCGG- -5'
28990 3' -62.9 NC_006146.1 + 25023 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28990 3' -62.9 NC_006146.1 + 168500 0.73 0.249497
Target:  5'- gGAGGCC-CGCGGagaggCCguguguggAGGCCGGGCCu -3'
miRNA:   3'- gCUCCGGaGUGUCg----GG--------UCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 130313 0.7 0.378052
Target:  5'- gGAGGUUcgGCcGCCCAgGGCCAGGaCCu -3'
miRNA:   3'- gCUCCGGagUGuCGGGU-CCGGUCC-GG- -5'
28990 3' -62.9 NC_006146.1 + 44766 0.7 0.378052
Target:  5'- uCGGGGCCcgGCGGgcggggaaCCCAGGCCGGGg- -3'
miRNA:   3'- -GCUCCGGagUGUC--------GGGUCCGGUCCgg -5'
28990 3' -62.9 NC_006146.1 + 146766 0.72 0.305339
Target:  5'- aGAGGCCgagUCACgcgacagguacaGGCCCGGuGCCAGccGCCc -3'
miRNA:   3'- gCUCCGG---AGUG------------UCGGGUC-CGGUC--CGG- -5'
28990 3' -62.9 NC_006146.1 + 98974 0.72 0.312103
Target:  5'- --cGGCaua--GGCCCAGGUCAGGCCc -3'
miRNA:   3'- gcuCCGgagugUCGGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 67313 0.71 0.325971
Target:  5'- -cGGGCCacguccgcgCugAGCCCGGcCCAGGCCc -3'
miRNA:   3'- gcUCCGGa--------GugUCGGGUCcGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 128201 0.71 0.333075
Target:  5'- gGGGGCgC-CGCGGCgCCGGGCCAGacGCUc -3'
miRNA:   3'- gCUCCG-GaGUGUCG-GGUCCGGUC--CGG- -5'
28990 3' -62.9 NC_006146.1 + 13711 0.71 0.355062
Target:  5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 26022 0.71 0.355062
Target:  5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 45415 0.7 0.370279
Target:  5'- -uGGGCCagCGCgaGGCCCcGGCCGGGUUg -3'
miRNA:   3'- gcUCCGGa-GUG--UCGGGuCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 169047 0.7 0.370279
Target:  5'- gGAGGCCggCGCGcGCCCGGGgucCCGGGg- -3'
miRNA:   3'- gCUCCGGa-GUGU-CGGGUCC---GGUCCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.