miRNA display CGI


Results 81 - 100 of 562 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 3' -62.9 NC_006146.1 + 60622 0.72 0.305339
Target:  5'- cCGAGGCCaUCAUGGCagaCGGGgcucugCAGGCCa -3'
miRNA:   3'- -GCUCCGG-AGUGUCGg--GUCCg-----GUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 163776 0.71 0.325267
Target:  5'- aGcAGGCCaUCcucuaguuaguauGCAGCCUGGGCCuuggcGGGCCa -3'
miRNA:   3'- gC-UCCGG-AG-------------UGUCGGGUCCGG-----UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 109294 0.71 0.325971
Target:  5'- gGAGGgaUCuCGGCCCcGGCCGcGGCCg -3'
miRNA:   3'- gCUCCggAGuGUCGGGuCCGGU-CCGG- -5'
28990 3' -62.9 NC_006146.1 + 52818 0.71 0.340291
Target:  5'- aCGAGGCCgu---GCCCAGGaugcggaGGGCCg -3'
miRNA:   3'- -GCUCCGGaguguCGGGUCCgg-----UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 16789 0.71 0.355062
Target:  5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 45415 0.7 0.370279
Target:  5'- -uGGGCCagCGCgaGGCCCcGGCCGGGUUg -3'
miRNA:   3'- gcUCCGGa-GUG--UCGGGuCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 169047 0.7 0.370279
Target:  5'- gGAGGCCggCGCGcGCCCGGGgucCCGGGg- -3'
miRNA:   3'- gCUCCGGa-GUGU-CGGGUCC---GGUCCgg -5'
28990 3' -62.9 NC_006146.1 + 168500 0.73 0.249497
Target:  5'- gGAGGCC-CGCGGagaggCCguguguggAGGCCGGGCCu -3'
miRNA:   3'- gCUCCGGaGUGUCg----GG--------UCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 25023 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28990 3' -62.9 NC_006146.1 + 69862 0.73 0.249497
Target:  5'- gGAGGUCgggCGuagaGGCCCAGGuCCAcGGCCg -3'
miRNA:   3'- gCUCCGGa--GUg---UCGGGUCC-GGU-CCGG- -5'
28990 3' -62.9 NC_006146.1 + 154983 0.7 0.391517
Target:  5'- --cGGCCUCGCgcagGGCCCGgcacagaaguugcuGGCUcgAGGCCa -3'
miRNA:   3'- gcuCCGGAGUG----UCGGGU--------------CCGG--UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 25733 0.7 0.393925
Target:  5'- aGGGuGCCUCcCcgGGuCCCAGGCCAG-CCg -3'
miRNA:   3'- gCUC-CGGAGuG--UC-GGGUCCGGUCcGG- -5'
28990 3' -62.9 NC_006146.1 + 64616 0.7 0.393925
Target:  5'- uGAGG-UUCAUGGCgCAGGCCAGGa- -3'
miRNA:   3'- gCUCCgGAGUGUCGgGUCCGGUCCgg -5'
28990 3' -62.9 NC_006146.1 + 159892 0.7 0.410224
Target:  5'- aGAgGGCCUCGaGGCCgGGGCCcucgaagaugggGGGCa -3'
miRNA:   3'- gCU-CCGGAGUgUCGGgUCCGG------------UCCGg -5'
28990 3' -62.9 NC_006146.1 + 168340 0.7 0.410224
Target:  5'- cCGGGGCCUgGCGGgggCCAGcGCgGGGUCc -3'
miRNA:   3'- -GCUCCGGAgUGUCg--GGUC-CGgUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 24924 1.1 0.000681
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCc -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 80926 0.78 0.11565
Target:  5'- uCGA-GCCUCcCGGCCCA-GCCAGGCCc -3'
miRNA:   3'- -GCUcCGGAGuGUCGGGUcCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 78585 0.77 0.147667
Target:  5'- -cAGGCCgggCccgccccccagcaGCAGcCCCAGGCCGGGCCc -3'
miRNA:   3'- gcUCCGGa--G-------------UGUC-GGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 78765 0.77 0.147667
Target:  5'- -cAGGCCgggCccgccccccagcaGCAGcCCCAGGCCGGGCCc -3'
miRNA:   3'- gcUCCGGa--G-------------UGUC-GGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 98334 0.74 0.22228
Target:  5'- aCGGGGCCgggCGCGGCCCGucccGGuCCAGGagaCa -3'
miRNA:   3'- -GCUCCGGa--GUGUCGGGU----CC-GGUCCg--G- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.