miRNA display CGI


Results 121 - 140 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 3' -62.9 NC_006146.1 + 153305 0.74 0.227514
Target:  5'- -cAGGCacca-GGCCCGGGCCAGGUCg -3'
miRNA:   3'- gcUCCGgagugUCGGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 12711 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28990 3' -62.9 NC_006146.1 + 25177 0.69 0.418529
Target:  5'- gCGAGGCUggGUGGCUgggCAGGCCGGGUCu -3'
miRNA:   3'- -GCUCCGGagUGUCGG---GUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 170203 0.7 0.410224
Target:  5'- cCGGGGCCUgGCGGgggCCAGcGCgGGGUCc -3'
miRNA:   3'- -GCUCCGGAgUGUCg--GGUC-CGgUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 167408 0.7 0.410224
Target:  5'- cCGGGGCCUgGCGGgggCCAGcGCgGGGUCc -3'
miRNA:   3'- -GCUCCGGAgUGUCg--GGUC-CGgUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 54242 0.73 0.273205
Target:  5'- aGA-GCCUCuggGCGGCCCcGGUCAGGCg -3'
miRNA:   3'- gCUcCGGAG---UGUCGGGuCCGGUCCGg -5'
28990 3' -62.9 NC_006146.1 + 41612 0.72 0.292148
Target:  5'- gGGGGCUgguccgCugGGCCCGGGCgCAGaCCa -3'
miRNA:   3'- gCUCCGGa-----GugUCGGGUCCG-GUCcGG- -5'
28990 3' -62.9 NC_006146.1 + 146766 0.72 0.305339
Target:  5'- aGAGGCCgagUCACgcgacagguacaGGCCCGGuGCCAGccGCCc -3'
miRNA:   3'- gCUCCGG---AGUG------------UCGGGUC-CGGUC--CGG- -5'
28990 3' -62.9 NC_006146.1 + 157339 0.72 0.31898
Target:  5'- --cGGCCUgcuugCGCAGCCCGGcGCCcGGCg -3'
miRNA:   3'- gcuCCGGA-----GUGUCGGGUC-CGGuCCGg -5'
28990 3' -62.9 NC_006146.1 + 67313 0.71 0.325971
Target:  5'- -cGGGCCacguccgcgCugAGCCCGGcCCAGGCCc -3'
miRNA:   3'- gcUCCGGa--------GugUCGGGUCcGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 74968 0.71 0.333075
Target:  5'- cCGGGGCCaguaCAgAGUCCAGaaGCgGGGCCa -3'
miRNA:   3'- -GCUCCGGa---GUgUCGGGUC--CGgUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 13711 0.71 0.355062
Target:  5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 131069 0.71 0.355062
Target:  5'- --cGGCCcacugUGCGGCCgAGGCCgccGGGCCg -3'
miRNA:   3'- gcuCCGGa----GUGUCGGgUCCGG---UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 45415 0.7 0.370279
Target:  5'- -uGGGCCagCGCgaGGCCCcGGCCGGGUUg -3'
miRNA:   3'- gcUCCGGa-GUG--UCGGGuCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 169979 0.7 0.370279
Target:  5'- gGAGGCCggCGCGcGCCCGGGgucCCGGGg- -3'
miRNA:   3'- gCUCCGGa-GUGU-CGGGUCC---GGUCCgg -5'
28990 3' -62.9 NC_006146.1 + 44766 0.7 0.378052
Target:  5'- uCGGGGCCcgGCGGgcggggaaCCCAGGCCGGGg- -3'
miRNA:   3'- -GCUCCGGagUGUC--------GGGUCCGGUCCgg -5'
28990 3' -62.9 NC_006146.1 + 4365 0.7 0.385935
Target:  5'- aCGuGGCC--ACGGCCCcgcGGGCucccCAGGCCg -3'
miRNA:   3'- -GCuCCGGagUGUCGGG---UCCG----GUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 16499 0.7 0.393925
Target:  5'- aGGGuGCCUCcCcgGGuCCCAGGCCAG-CCg -3'
miRNA:   3'- gCUC-CGGAGuG--UC-GGGUCCGGUCcGG- -5'
28990 3' -62.9 NC_006146.1 + 28811 0.7 0.393925
Target:  5'- aGGGuGCCUCcCcgGGuCCCAGGCCAG-CCg -3'
miRNA:   3'- gCUC-CGGAGuG--UC-GGGUCCGGUCcGG- -5'
28990 3' -62.9 NC_006146.1 + 110558 0.7 0.401208
Target:  5'- aGAGGCUgcccaccgcagagUagacacucgcCACGGUCCGGGUCAGGUCg -3'
miRNA:   3'- gCUCCGG-------------A----------GUGUCGGGUCCGGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.