miRNA display CGI


Results 141 - 160 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 3' -62.9 NC_006146.1 + 21009 0.68 0.505827
Target:  5'- aGGGGucuucuaCCUCACucuAGCCCuccAGGCCcuccgAGGCCc -3'
miRNA:   3'- gCUCC-------GGAGUG---UCGGG---UCCGG-----UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 56780 0.68 0.496632
Target:  5'- gCGcAGGCCUCcucggugagcgcgGCGGCCgucuggCGGGCgGGGCUu -3'
miRNA:   3'- -GC-UCCGGAG-------------UGUCGG------GUCCGgUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 28255 0.69 0.418529
Target:  5'- gCGAGGCUggGUGGCUgggCAGGCCGGGUCu -3'
miRNA:   3'- -GCUCCGGagUGUCGG---GUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 19021 0.69 0.418529
Target:  5'- gCGAGGCUggGUGGCUgggCAGGCCGGGUCu -3'
miRNA:   3'- -GCUCCGGagUGUCGG---GUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 159892 0.7 0.410224
Target:  5'- aGAgGGCCUCGaGGCCgGGGCCcucgaagaugggGGGCa -3'
miRNA:   3'- gCU-CCGGAGUgUCGGgUCCGG------------UCCGg -5'
28990 3' -62.9 NC_006146.1 + 110558 0.7 0.401208
Target:  5'- aGAGGCUgcccaccgcagagUagacacucgcCACGGUCCGGGUCAGGUCg -3'
miRNA:   3'- gCUCCGG-------------A----------GUGUCGGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 25733 0.7 0.393925
Target:  5'- aGGGuGCCUCcCcgGGuCCCAGGCCAG-CCg -3'
miRNA:   3'- gCUC-CGGAGuG--UC-GGGUCCGGUCcGG- -5'
28990 3' -62.9 NC_006146.1 + 16499 0.7 0.393925
Target:  5'- aGGGuGCCUCcCcgGGuCCCAGGCCAG-CCg -3'
miRNA:   3'- gCUC-CGGAGuG--UC-GGGUCCGGUCcGG- -5'
28990 3' -62.9 NC_006146.1 + 55396 0.7 0.378052
Target:  5'- cCGAGGCCagcaUCACGGCgUAGucgcccGCCGcGGCCu -3'
miRNA:   3'- -GCUCCGG----AGUGUCGgGUC------CGGU-CCGG- -5'
28990 3' -62.9 NC_006146.1 + 128058 0.7 0.378052
Target:  5'- gCGuGGGCCUgGCGGCCCucgAGGCCcugauccuGGUCu -3'
miRNA:   3'- -GC-UCCGGAgUGUCGGG---UCCGGu-------CCGG- -5'
28990 3' -62.9 NC_006146.1 + 48222 0.69 0.418529
Target:  5'- -aGGGCCUgGCGcGCCUGGGUgAGcGCCg -3'
miRNA:   3'- gcUCCGGAgUGU-CGGGUCCGgUC-CGG- -5'
28990 3' -62.9 NC_006146.1 + 59252 0.69 0.426935
Target:  5'- -uGGGCCUgGguGUUCAgGGCCuGGCCg -3'
miRNA:   3'- gcUCCGGAgUguCGGGU-CCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 21180 0.68 0.488421
Target:  5'- --cGGaCCUUccaGGCCCGGGCCcccaggucucGGGCCa -3'
miRNA:   3'- gcuCC-GGAGug-UCGGGUCCGG----------UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 94611 0.68 0.487513
Target:  5'- aGAGccGCgUC-CAGCCCacguacuGGGCCGGGUCc -3'
miRNA:   3'- gCUC--CGgAGuGUCGGG-------UCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 27699 0.68 0.479374
Target:  5'- aGucGCCUCAa--CCCGGGCUucAGGCCc -3'
miRNA:   3'- gCucCGGAGUgucGGGUCCGG--UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 18465 0.68 0.479374
Target:  5'- aGucGCCUCAa--CCCGGGCUucAGGCCc -3'
miRNA:   3'- gCucCGGAGUgucGGGUCCGG--UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 38042 0.68 0.470409
Target:  5'- -cAGaCCUCACagugggAGCCCAGaGUCAGGCUg -3'
miRNA:   3'- gcUCcGGAGUG------UCGGGUC-CGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 94776 0.69 0.452741
Target:  5'- aGAgGGCCcagUUGCGGgCCacguccacguAGGCCAGGCCc -3'
miRNA:   3'- gCU-CCGG---AGUGUCgGG----------UCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 44646 0.69 0.444043
Target:  5'- aGAGGCgUCucccaAGCCCGGGCgCcuGGGUCc -3'
miRNA:   3'- gCUCCGgAGug---UCGGGUCCG-G--UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 53474 0.69 0.435441
Target:  5'- gCGGGuGCCUCGuCGGUCaGGGCCGGGg- -3'
miRNA:   3'- -GCUC-CGGAGU-GUCGGgUCCGGUCCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.