miRNA display CGI


Results 101 - 120 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 3' -62.9 NC_006146.1 + 128761 0.66 0.601969
Target:  5'- cCGAGGCCUUcuucuggaguGUGGCCagcaGGGCCGaagcgugaucGGCCa -3'
miRNA:   3'- -GCUCCGGAG----------UGUCGGg---UCCGGU----------CCGG- -5'
28990 3' -62.9 NC_006146.1 + 105194 0.66 0.601969
Target:  5'- cCGGGGCCggGgAGCCgGGGgugcCCGGuGCCu -3'
miRNA:   3'- -GCUCCGGagUgUCGGgUCC----GGUC-CGG- -5'
28990 3' -62.9 NC_006146.1 + 45049 0.66 0.601969
Target:  5'- -aGGGCCUCGCGGgCCuuGGGCUugaugaccGGUCg -3'
miRNA:   3'- gcUCCGGAGUGUCgGG--UCCGGu-------CCGG- -5'
28990 3' -62.9 NC_006146.1 + 128391 0.66 0.601969
Target:  5'- -cAGGCaguagcCGCAGUCCAGGCagaacacGGCCa -3'
miRNA:   3'- gcUCCGga----GUGUCGGGUCCGgu-----CCGG- -5'
28990 3' -62.9 NC_006146.1 + 31671 0.66 0.601969
Target:  5'- -cAGGCaa-ACAGCCCAGGgaCCAGGg- -3'
miRNA:   3'- gcUCCGgagUGUCGGGUCC--GGUCCgg -5'
28990 3' -62.9 NC_006146.1 + 33475 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 33568 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 34776 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 34683 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 34590 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 34497 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 34404 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 34311 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 34218 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 34125 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 34032 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 33939 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 33847 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 33754 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 33661 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.