miRNA display CGI


Results 121 - 140 of 562 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 3' -62.9 NC_006146.1 + 62722 0.66 0.592262
Target:  5'- --cGGCCgugUACAuGCCCAGgauaGCCGGaGCCc -3'
miRNA:   3'- gcuCCGGa--GUGU-CGGGUC----CGGUC-CGG- -5'
28990 3' -62.9 NC_006146.1 + 137015 0.66 0.591293
Target:  5'- gGuAGGCCgggCACAcCCCggggaggAGGCCGGGUg -3'
miRNA:   3'- gC-UCCGGa--GUGUcGGG-------UCCGGUCCGg -5'
28990 3' -62.9 NC_006146.1 + 117691 0.66 0.608777
Target:  5'- -aAGGCC-CGCGgaguuuggcacgccGCCCcccaAGGCCGgGGCCg -3'
miRNA:   3'- gcUCCGGaGUGU--------------CGGG----UCCGGU-CCGG- -5'
28990 3' -62.9 NC_006146.1 + 6414 0.66 0.611697
Target:  5'- uGGGGUCcCuuuGGCCCAgGGCCauguGGGCCc -3'
miRNA:   3'- gCUCCGGaGug-UCGGGU-CCGG----UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 92072 0.66 0.611697
Target:  5'- uGGGGCUgcugCugggggGCGGCCC-GGCCugGGGCUg -3'
miRNA:   3'- gCUCCGGa---G------UGUCGGGuCCGG--UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 34218 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 34125 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 34032 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 33939 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 33847 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 33754 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 33661 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 118981 0.67 0.582581
Target:  5'- cCGGGGCCgcccgUCGguGCCUcggAGGCCcccGCCg -3'
miRNA:   3'- -GCUCCGG-----AGUguCGGG---UCCGGuc-CGG- -5'
28990 3' -62.9 NC_006146.1 + 33568 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 33475 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 33382 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 80335 0.66 0.620464
Target:  5'- uGGGGCCUUcu--CCCGGGucuucucCCGGGCCc -3'
miRNA:   3'- gCUCCGGAGugucGGGUCC-------GGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 126099 0.66 0.615592
Target:  5'- gCGGGGCCUCagaaacACaccauccagauccccGGCCUGGguuccccgcccGCCGGGCCc -3'
miRNA:   3'- -GCUCCGGAG------UG---------------UCGGGUC-----------CGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 139571 0.66 0.611697
Target:  5'- uGAGGCCUguaAGCCCaaugAGGCUgcgggGGGCg -3'
miRNA:   3'- gCUCCGGAgugUCGGG----UCCGG-----UCCGg -5'
28990 3' -62.9 NC_006146.1 + 13057 0.66 0.611697
Target:  5'- aGGcGGCgCUCGguGCCCguccccuccgGGGCCAGcGCg -3'
miRNA:   3'- gCU-CCG-GAGUguCGGG----------UCCGGUC-CGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.