miRNA display CGI


Results 1 - 20 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 3' -62.9 NC_006146.1 + 95470 0.65 0.647758
Target:  5'- gGGGGCuCUgAgAGCuCCGGGUCaaacucgggggagaAGGCCu -3'
miRNA:   3'- gCUCCG-GAgUgUCG-GGUCCGG--------------UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 2765 0.65 0.647758
Target:  5'- uCGcAGGCC-CA-AGCCCGGaugucagggaagacGCCAGGCg -3'
miRNA:   3'- -GC-UCCGGaGUgUCGGGUC--------------CGGUCCGg -5'
28990 3' -62.9 NC_006146.1 + 72574 0.66 0.621438
Target:  5'- -cGGGCCgcgCcCGGCCCcGuGCCAgacGGCCa -3'
miRNA:   3'- gcUCCGGa--GuGUCGGGuC-CGGU---CCGG- -5'
28990 3' -62.9 NC_006146.1 + 158592 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5'
28990 3' -62.9 NC_006146.1 + 155513 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5'
28990 3' -62.9 NC_006146.1 + 152435 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5'
28990 3' -62.9 NC_006146.1 + 149357 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5'
28990 3' -62.9 NC_006146.1 + 146279 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5'
28990 3' -62.9 NC_006146.1 + 143201 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5'
28990 3' -62.9 NC_006146.1 + 125956 0.66 0.621438
Target:  5'- cCGGGGCCUCcccGCGcCCCuGGCCacgagAGGUUc -3'
miRNA:   3'- -GCUCCGGAG---UGUcGGGuCCGG-----UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 32911 0.66 0.630212
Target:  5'- gGGGGCg-CACcccccaccccgccGGCCCccgggAGGCCcGGCCg -3'
miRNA:   3'- gCUCCGgaGUG-------------UCGGG-----UCCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 78021 0.66 0.631188
Target:  5'- gGuGGCCUaGCAGguaCCUGGGCUcguGGCCg -3'
miRNA:   3'- gCuCCGGAgUGUC---GGGUCCGGu--CCGG- -5'
28990 3' -62.9 NC_006146.1 + 128214 0.66 0.640937
Target:  5'- gGGGGgCUCugcCAGCCuCAGGCagcccaccgCGGGCg -3'
miRNA:   3'- gCUCCgGAGu--GUCGG-GUCCG---------GUCCGg -5'
28990 3' -62.9 NC_006146.1 + 123708 0.66 0.640937
Target:  5'- aGGGGCCUgGC-GCUCGGGgC-GGCg -3'
miRNA:   3'- gCUCCGGAgUGuCGGGUCCgGuCCGg -5'
28990 3' -62.9 NC_006146.1 + 10206 0.66 0.631188
Target:  5'- aCGAGacggaccuGCCUCuacCGGCCCuGGUCAuGuGCCg -3'
miRNA:   3'- -GCUC--------CGGAGu--GUCGGGuCCGGU-C-CGG- -5'
28990 3' -62.9 NC_006146.1 + 131934 0.66 0.631188
Target:  5'- gCGAGaGUCUgGgGGCCCAcccggauGCCAaGGCCa -3'
miRNA:   3'- -GCUC-CGGAgUgUCGGGUc------CGGU-CCGG- -5'
28990 3' -62.9 NC_006146.1 + 8510 0.66 0.631188
Target:  5'- --uGGCC-CACcggGGuCCCGGGCgCGGGCg -3'
miRNA:   3'- gcuCCGGaGUG---UC-GGGUCCG-GUCCGg -5'
28990 3' -62.9 NC_006146.1 + 119039 0.66 0.631188
Target:  5'- ----uCUUCAUccccauccccgGGCUCGGGCCAGGCCc -3'
miRNA:   3'- gcuccGGAGUG-----------UCGGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 117877 0.66 0.631188
Target:  5'- gCGGcGGCCgcggC-CAGCCgCgugAGGCCcaGGGCCa -3'
miRNA:   3'- -GCU-CCGGa---GuGUCGG-G---UCCGG--UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 49999 0.66 0.631188
Target:  5'- aGAGGCCgucggaggcgaUCcgguugauGCAGCCgGGGUCgAGGCg -3'
miRNA:   3'- gCUCCGG-----------AG--------UGUCGGgUCCGG-UCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.