miRNA display CGI


Results 1 - 20 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 3' -62.9 NC_006146.1 + 160 0.68 0.506751
Target:  5'- aGGGGCUUCGuCAcGCUC-GGCUGGGUCg -3'
miRNA:   3'- gCUCCGGAGU-GU-CGGGuCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 525 0.67 0.553756
Target:  5'- gGAGGCCcggccuccacaCACGGCCUcuccgcGGGCCuccacacguGGCCu -3'
miRNA:   3'- gCUCCGGa----------GUGUCGGG------UCCGGu--------CCGG- -5'
28990 3' -62.9 NC_006146.1 + 584 0.79 0.110021
Target:  5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3'
miRNA:   3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5'
28990 3' -62.9 NC_006146.1 + 691 0.68 0.497548
Target:  5'- cCGGGaCCcCGCgcuGGCCCccGCCAGGCCc -3'
miRNA:   3'- -GCUCcGGaGUG---UCGGGucCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 733 0.69 0.426935
Target:  5'- uCGGGaGCCcccuCAGCCCccGGCCGGcGCCg -3'
miRNA:   3'- -GCUC-CGGagu-GUCGGGu-CCGGUC-CGG- -5'
28990 3' -62.9 NC_006146.1 + 1091 0.68 0.506751
Target:  5'- aGGGGCUUCGuCAcGCUC-GGCUGGGUCg -3'
miRNA:   3'- gCUCCGGAGU-GU-CGGGuCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 1456 0.67 0.553756
Target:  5'- gGAGGCCcggccuccacaCACGGCCUcuccgcGGGCCuccacacguGGCCu -3'
miRNA:   3'- gCUCCGGa----------GUGUCGGG------UCCGGu--------CCGG- -5'
28990 3' -62.9 NC_006146.1 + 1515 0.79 0.110021
Target:  5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3'
miRNA:   3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5'
28990 3' -62.9 NC_006146.1 + 1622 0.68 0.497548
Target:  5'- cCGGGaCCcCGCgcuGGCCCccGCCAGGCCc -3'
miRNA:   3'- -GCUCcGGaGUG---UCGGGucCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 1664 0.69 0.426935
Target:  5'- uCGGGaGCCcccuCAGCCCccGGCCGGcGCCg -3'
miRNA:   3'- -GCUC-CGGagu-GUCGGGu-CCGGUC-CGG- -5'
28990 3' -62.9 NC_006146.1 + 2023 0.68 0.506751
Target:  5'- aGGGGCUUCGuCAcGCUC-GGCUGGGUCg -3'
miRNA:   3'- gCUCCGGAGU-GU-CGGGuCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 2388 0.67 0.553756
Target:  5'- gGAGGCCcggccuccacaCACGGCCUcuccgcGGGCCuccacacguGGCCu -3'
miRNA:   3'- gCUCCGGa----------GUGUCGGG------UCCGGu--------CCGG- -5'
28990 3' -62.9 NC_006146.1 + 2447 0.79 0.110021
Target:  5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3'
miRNA:   3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5'
28990 3' -62.9 NC_006146.1 + 2554 0.68 0.497548
Target:  5'- cCGGGaCCcCGCgcuGGCCCccGCCAGGCCc -3'
miRNA:   3'- -GCUCcGGaGUG---UCGGGucCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 2596 0.69 0.426935
Target:  5'- uCGGGaGCCcccuCAGCCCccGGCCGGcGCCg -3'
miRNA:   3'- -GCUC-CGGagu-GUCGGGu-CCGGUC-CGG- -5'
28990 3' -62.9 NC_006146.1 + 2765 0.65 0.647758
Target:  5'- uCGcAGGCC-CA-AGCCCGGaugucagggaagacGCCAGGCg -3'
miRNA:   3'- -GC-UCCGGaGUgUCGGGUC--------------CGGUCCGg -5'
28990 3' -62.9 NC_006146.1 + 2956 0.68 0.506751
Target:  5'- aGGGGCUUCGuCAcGCUC-GGCUGGGUCg -3'
miRNA:   3'- gCUCCGGAGU-GU-CGGGuCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 3257 0.67 0.534773
Target:  5'- aGGGGaCCUggggACGGCgCAGGCCAcGaGCCg -3'
miRNA:   3'- gCUCC-GGAg---UGUCGgGUCCGGU-C-CGG- -5'
28990 3' -62.9 NC_006146.1 + 3320 0.67 0.553756
Target:  5'- gGAGGCCcggccuccacaCACGGCCUcuccgcGGGCCuccacacguGGCCu -3'
miRNA:   3'- gCUCCGGa----------GUGUCGGG------UCCGGu--------CCGG- -5'
28990 3' -62.9 NC_006146.1 + 3379 0.79 0.110021
Target:  5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3'
miRNA:   3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.