miRNA display CGI


Results 1 - 20 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 3' -62.9 NC_006146.1 + 12611 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 51976 0.77 0.148028
Target:  5'- gGAGGUCUC-CGGCaugCGGGCCGGGCg -3'
miRNA:   3'- gCUCCGGAGuGUCGg--GUCCGGUCCGg -5'
28990 3' -62.9 NC_006146.1 + 61933 0.74 0.21715
Target:  5'- cCGAGGCCuUCACgGGCCCggugaucaAGGCUcaggacacggGGGCCg -3'
miRNA:   3'- -GCUCCGG-AGUG-UCGGG--------UCCGG----------UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 2765 0.65 0.647758
Target:  5'- uCGcAGGCC-CA-AGCCCGGaugucagggaagacGCCAGGCg -3'
miRNA:   3'- -GC-UCCGGaGUgUCGGGUC--------------CGGUCCGg -5'
28990 3' -62.9 NC_006146.1 + 28001 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 24924 1.1 0.000681
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCc -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 78830 0.79 0.097052
Target:  5'- -cGGGCCgccccccgcaGCAGcCCCAGGCCGGGCCc -3'
miRNA:   3'- gcUCCGGag--------UGUC-GGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 80926 0.78 0.11565
Target:  5'- uCGA-GCCUCcCGGCCCA-GCCAGGCCc -3'
miRNA:   3'- -GCUcCGGAGuGUCGGGUcCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 155142 0.77 0.144451
Target:  5'- cCGcGGCgUCGCAGCagCGGGCCAgGGCCa -3'
miRNA:   3'- -GCuCCGgAGUGUCGg-GUCCGGU-CCGG- -5'
28990 3' -62.9 NC_006146.1 + 78883 0.77 0.147667
Target:  5'- -cAGGCCgggCccgccccccagcaGCAGcCCCAGGCCGGGCCc -3'
miRNA:   3'- gcUCCGGa--G-------------UGUC-GGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 78645 0.77 0.147667
Target:  5'- -cAGGCCgggCccgccccccagcaGCAGCCaCAGGCCGGGCCc -3'
miRNA:   3'- gcUCCGGa--G-------------UGUCGG-GUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 129031 0.78 0.130918
Target:  5'- cCGGGGCacggCGCAGCCCGaGCUGGGCCc -3'
miRNA:   3'- -GCUCCGga--GUGUCGGGUcCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 15690 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 78705 0.77 0.147667
Target:  5'- -cAGGCCgggCccgccccccagcaGCAGcCCCAGGCCGGGCCc -3'
miRNA:   3'- gcUCCGGa--G-------------UGUC-GGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 18768 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 47330 0.78 0.11565
Target:  5'- uGAuGGCCUC-CAG-CCGGGCCAGGCg -3'
miRNA:   3'- gCU-CCGGAGuGUCgGGUCCGGUCCGg -5'
28990 3' -62.9 NC_006146.1 + 78765 0.77 0.147667
Target:  5'- -cAGGCCgggCccgccccccagcaGCAGcCCCAGGCCGGGCCc -3'
miRNA:   3'- gcUCCGGa--G-------------UGUC-GGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 113673 0.76 0.159249
Target:  5'- aGAGGUggCUCG-GGCCCGGGCCcGGCCu -3'
miRNA:   3'- gCUCCG--GAGUgUCGGGUCCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 21846 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 146827 0.8 0.08751
Target:  5'- gCGAGGCCgCGCcagcguagAGCCCGGGCCuggcucgGGGCCg -3'
miRNA:   3'- -GCUCCGGaGUG--------UCGGGUCCGG-------UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.