Results 21 - 40 of 562 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 117877 | 0.66 | 0.631188 |
Target: 5'- gCGGcGGCCgcggC-CAGCCgCgugAGGCCcaGGGCCa -3' miRNA: 3'- -GCU-CCGGa---GuGUCGG-G---UCCGG--UCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 119039 | 0.66 | 0.631188 |
Target: 5'- ----uCUUCAUccccauccccgGGCUCGGGCCAGGCCc -3' miRNA: 3'- gcuccGGAGUG-----------UCGGGUCCGGUCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 8510 | 0.66 | 0.631188 |
Target: 5'- --uGGCC-CACcggGGuCCCGGGCgCGGGCg -3' miRNA: 3'- gcuCCGGaGUG---UC-GGGUCCG-GUCCGg -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 131934 | 0.66 | 0.631188 |
Target: 5'- gCGAGaGUCUgGgGGCCCAcccggauGCCAaGGCCa -3' miRNA: 3'- -GCUC-CGGAgUgUCGGGUc------CGGU-CCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 10206 | 0.66 | 0.631188 |
Target: 5'- aCGAGacggaccuGCCUCuacCGGCCCuGGUCAuGuGCCg -3' miRNA: 3'- -GCUC--------CGGAGu--GUCGGGuCCGGU-C-CGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 69472 | 0.66 | 0.631188 |
Target: 5'- --cGGCUuaACcaggauGCCCugcauGGCCAGGCCc -3' miRNA: 3'- gcuCCGGagUGu-----CGGGu----CCGGUCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 78021 | 0.66 | 0.631188 |
Target: 5'- gGuGGCCUaGCAGguaCCUGGGCUcguGGCCg -3' miRNA: 3'- gCuCCGGAgUGUC---GGGUCCGGu--CCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 32911 | 0.66 | 0.630212 |
Target: 5'- gGGGGCg-CACcccccaccccgccGGCCCccgggAGGCCcGGCCg -3' miRNA: 3'- gCUCCGgaGUG-------------UCGGG-----UCCGGuCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 53867 | 0.66 | 0.630212 |
Target: 5'- gCGAcgcuGGCCcucagCGCccccguagggcguAGCCCAGGUCcaGGGCCc -3' miRNA: 3'- -GCU----CCGGa----GUG-------------UCGGGUCCGG--UCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 156356 | 0.66 | 0.630212 |
Target: 5'- aGcGGCCcaGCAGCuCCAGGgcccgguCCAGGCUc -3' miRNA: 3'- gCuCCGGagUGUCG-GGUCC-------GGUCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 34961 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 155513 | 0.66 | 0.621438 |
Target: 5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3' miRNA: 3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 158592 | 0.66 | 0.621438 |
Target: 5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3' miRNA: 3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 35612 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 35519 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 35426 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 35333 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 35240 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 35147 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
|||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 35054 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home