miRNA display CGI


Results 61 - 80 of 590 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 5' -53 NC_006146.1 + 2241 0.66 0.982899
Target:  5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3'
miRNA:   3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5'
28990 5' -53 NC_006146.1 + 1309 0.66 0.982899
Target:  5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3'
miRNA:   3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5'
28990 5' -53 NC_006146.1 + 3173 0.66 0.982899
Target:  5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3'
miRNA:   3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5'
28990 5' -53 NC_006146.1 + 44350 0.66 0.982899
Target:  5'- uCCGuGaCCgcGGGCCCCGggGGC-AGAGACa -3'
miRNA:   3'- -GGC-C-GG--UCCGGGGUa-UUGaUUUCUGg -5'
28990 5' -53 NC_006146.1 + 71699 0.66 0.982899
Target:  5'- -aGGCCGcGGCCUCc---CUGGAGGCg -3'
miRNA:   3'- ggCCGGU-CCGGGGuauuGAUUUCUGg -5'
28990 5' -53 NC_006146.1 + 124130 0.66 0.982899
Target:  5'- gCCGGCCAGccauccGCCCgGggucgggaGGC-GAGGACCc -3'
miRNA:   3'- -GGCCGGUC------CGGGgUa-------UUGaUUUCUGG- -5'
28990 5' -53 NC_006146.1 + 130015 0.66 0.982899
Target:  5'- gUCGuCCGGuGCUCCGUGAUgu-AGGCCc -3'
miRNA:   3'- -GGCcGGUC-CGGGGUAUUGauuUCUGG- -5'
28990 5' -53 NC_006146.1 + 55527 0.66 0.982899
Target:  5'- gCGGCCAGGgCCUccAGCUcc--GCCg -3'
miRNA:   3'- gGCCGGUCCgGGGuaUUGAuuucUGG- -5'
28990 5' -53 NC_006146.1 + 50493 0.66 0.982899
Target:  5'- aUGGCCAGGuuggcccccaCCCCGUcGgUGAAGAa- -3'
miRNA:   3'- gGCCGGUCC----------GGGGUAuUgAUUUCUgg -5'
28990 5' -53 NC_006146.1 + 162472 0.66 0.982899
Target:  5'- cCCGaGCUcuccuGGuCCCCAggguccgGACUauGAAGACCc -3'
miRNA:   3'- -GGC-CGGu----CC-GGGGUa------UUGA--UUUCUGG- -5'
28990 5' -53 NC_006146.1 + 42799 0.66 0.982703
Target:  5'- cUCGGCCAGGUuggcgguCUCGcagAGCguguAGACCa -3'
miRNA:   3'- -GGCCGGUCCG-------GGGUa--UUGauu-UCUGG- -5'
28990 5' -53 NC_006146.1 + 49009 0.66 0.982307
Target:  5'- aCCGGCUAGGagccgcagggcguuCUCCGgGGCgcggcccGAGACCg -3'
miRNA:   3'- -GGCCGGUCC--------------GGGGUaUUGau-----UUCUGG- -5'
28990 5' -53 NC_006146.1 + 149978 0.66 0.982107
Target:  5'- -gGGCCAGGgCCUgcaggucggccgGACUcAGGGCCu -3'
miRNA:   3'- ggCCGGUCCgGGGua----------UUGAuUUCUGG- -5'
28990 5' -53 NC_006146.1 + 99125 0.66 0.9817
Target:  5'- uCCGGCCucaggcgucuccacaGgGGCUCCAgcgaccggcaggUGGCgGAGGGCCa -3'
miRNA:   3'- -GGCCGG---------------U-CCGGGGU------------AUUGaUUUCUGG- -5'
28990 5' -53 NC_006146.1 + 167090 0.66 0.980867
Target:  5'- cCCcGCCuGGCcugaCCCAgaccUGACUGuGGGCCa -3'
miRNA:   3'- -GGcCGGuCCG----GGGU----AUUGAUuUCUGG- -5'
28990 5' -53 NC_006146.1 + 7695 0.66 0.980867
Target:  5'- aCGGCCugcccGGCUCCu---CUGAGGGgCa -3'
miRNA:   3'- gGCCGGu----CCGGGGuauuGAUUUCUgG- -5'
28990 5' -53 NC_006146.1 + 74198 0.66 0.980867
Target:  5'- uCUGGUCcgugAGGCacuugaCCAccguGCUGGAGACCu -3'
miRNA:   3'- -GGCCGG----UCCGg-----GGUau--UGAUUUCUGG- -5'
28990 5' -53 NC_006146.1 + 51580 0.66 0.980867
Target:  5'- gCCGGgaGGGgCCCGggggAGCcagAGGGGCCa -3'
miRNA:   3'- -GGCCggUCCgGGGUa---UUGa--UUUCUGG- -5'
28990 5' -53 NC_006146.1 + 42702 0.66 0.980867
Target:  5'- uCUGGCCcGGCgCCGcGGCgccccccuGGGCCg -3'
miRNA:   3'- -GGCCGGuCCGgGGUaUUGauu-----UCUGG- -5'
28990 5' -53 NC_006146.1 + 19134 0.66 0.980867
Target:  5'- aCUGGgCAGGCgCaa-GGCUGAcgGGGCCa -3'
miRNA:   3'- -GGCCgGUCCGgGguaUUGAUU--UCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.