Results 1 - 20 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28990 | 5' | -53 | NC_006146.1 | + | 55762 | 0.66 | 0.98647 |
Target: 5'- cCCGGCggCGGGCCagg-GGCagcGAGGCCa -3' miRNA: 3'- -GGCCG--GUCCGGgguaUUGau-UUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 143125 | 0.66 | 0.98647 |
Target: 5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3' miRNA: 3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 42294 | 0.66 | 0.98647 |
Target: 5'- -aGGCCAGGUagCCCAgcGCcagAAAGuacaGCCg -3' miRNA: 3'- ggCCGGUCCG--GGGUauUGa--UUUC----UGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 123509 | 0.66 | 0.986307 |
Target: 5'- cCUGGCCAcGGucgaCCCCAggcgggucgcgggUGGCaaGGAGACCg -3' miRNA: 3'- -GGCCGGU-CC----GGGGU-------------AUUGa-UUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 137366 | 0.66 | 0.986307 |
Target: 5'- -gGGCCAGGCaagccgggcacaaCCUAgggagGGAGGCCg -3' miRNA: 3'- ggCCGGUCCG-------------GGGUauugaUUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 112582 | 0.66 | 0.986307 |
Target: 5'- gCUGGCCAGGguggaguucuccaCCCCGgcgaAGCgcaugAAGGGCg -3' miRNA: 3'- -GGCCGGUCC-------------GGGGUa---UUGa----UUUCUGg -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 16697 | 0.66 | 0.985465 |
Target: 5'- gCCaGCCAGacgcagguccacgacGCCCCGggguggauACUGuGGACCu -3' miRNA: 3'- -GGcCGGUC---------------CGGGGUau------UGAUuUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 157456 | 0.66 | 0.984764 |
Target: 5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3' miRNA: 3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 154378 | 0.66 | 0.984764 |
Target: 5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3' miRNA: 3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 146203 | 0.66 | 0.98647 |
Target: 5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3' miRNA: 3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 149281 | 0.66 | 0.98647 |
Target: 5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3' miRNA: 3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 152359 | 0.66 | 0.98647 |
Target: 5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3' miRNA: 3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 125002 | 0.66 | 0.98647 |
Target: 5'- aCCGGCCGGGCgcugagaaauCUCAUGccCUAcGGAaCCc -3' miRNA: 3'- -GGCCGGUCCG----------GGGUAUu-GAUuUCU-GG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 108972 | 0.66 | 0.98647 |
Target: 5'- aCCGGgCCcgugaAGGCCUCGg----AGGGACCc -3' miRNA: 3'- -GGCC-GG-----UCCGGGGUauugaUUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 62528 | 0.66 | 0.98647 |
Target: 5'- cCCGG--GGGCUuuGUuAUUAAAGGCCa -3' miRNA: 3'- -GGCCggUCCGGggUAuUGAUUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 137175 | 0.66 | 0.98647 |
Target: 5'- aCCGGaCCGGaggaGCUCCAgAACggggguAGGCCg -3' miRNA: 3'- -GGCC-GGUC----CGGGGUaUUGauu---UCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 56949 | 0.66 | 0.98647 |
Target: 5'- cCUGGCCAcGGCagCAU-ACUcucaAGAGACCc -3' miRNA: 3'- -GGCCGGU-CCGggGUAuUGA----UUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 52264 | 0.66 | 0.98647 |
Target: 5'- aCGGCCGGaGaCCCAgcaAGCagcGGACCu -3' miRNA: 3'- gGCCGGUC-CgGGGUa--UUGauuUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 158516 | 0.66 | 0.98647 |
Target: 5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3' miRNA: 3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 155437 | 0.66 | 0.98647 |
Target: 5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3' miRNA: 3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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