Results 21 - 40 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28990 | 5' | -53 | NC_006146.1 | + | 33498 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 34241 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 34427 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 34055 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 34799 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 33962 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 35728 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 34984 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 35542 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 35635 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 35449 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 35077 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 35263 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 35356 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 33591 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 111647 | 0.8 | 0.375898 |
Target: 5'- gUCGGCCAGGCCCUG-AACacccaggcccaUGGAGGCCa -3' miRNA: 3'- -GGCCGGUCCGGGGUaUUG-----------AUUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 155203 | 0.8 | 0.375898 |
Target: 5'- cUCGGCCAguGGCCCCGUGAUgAAGGugUa -3' miRNA: 3'- -GGCCGGU--CCGGGGUAUUGaUUUCugG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 147063 | 0.79 | 0.454746 |
Target: 5'- -gGGCCAGGUCCCGgcgUAGggAAAGGCCa -3' miRNA: 3'- ggCCGGUCCGGGGU---AUUgaUUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 46327 | 0.79 | 0.464052 |
Target: 5'- cUCGGCCGGGCuucugaccagCCgGUAGgUGAGGACCg -3' miRNA: 3'- -GGCCGGUCCG----------GGgUAUUgAUUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 14540 | 0.79 | 0.464052 |
Target: 5'- cCUGGaCCGGGCCCUggAGCUGcuGGGCCg -3' miRNA: 3'- -GGCC-GGUCCGGGGuaUUGAUu-UCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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