miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28991 3' -63 NC_006146.1 + 156241 0.66 0.677131
Target:  5'- cGGGAGgccGAGGGGGca-GCCaGGGa- -3'
miRNA:   3'- -CCCUCac-CUCCCCCuagCGGgCCCag -5'
28991 3' -63 NC_006146.1 + 55024 0.66 0.677131
Target:  5'- uGGGGGcgggcgGGAuGGGGGUCGgggCCGGGg- -3'
miRNA:   3'- -CCCUCa-----CCUcCCCCUAGCg--GGCCCag -5'
28991 3' -63 NC_006146.1 + 146602 0.66 0.667572
Target:  5'- -uGGGUGGAGGGGaaacagCGUCCagcccccggccaGGGUCa -3'
miRNA:   3'- ccCUCACCUCCCCcua---GCGGG------------CCCAG- -5'
28991 3' -63 NC_006146.1 + 134988 0.66 0.667572
Target:  5'- aGGGGGacccgcugcUGGGuGGGGGuuGUgGCCUGGG-Ca -3'
miRNA:   3'- -CCCUC---------ACCU-CCCCC--UAgCGGGCCCaG- -5'
28991 3' -63 NC_006146.1 + 56247 0.66 0.657987
Target:  5'- cGGGGGcGGAGGcGGGGcCGUCCucggcGGGg- -3'
miRNA:   3'- -CCCUCaCCUCC-CCCUaGCGGG-----CCCag -5'
28991 3' -63 NC_006146.1 + 61252 0.66 0.63877
Target:  5'- gGGGGGUGGugugccauAGaGGGGAgggagaccgauaUCGCCCaGGa- -3'
miRNA:   3'- -CCCUCACC--------UC-CCCCU------------AGCGGGcCCag -5'
28991 3' -63 NC_006146.1 + 10 0.66 0.63877
Target:  5'- aGGGG-GGAGGGGGGgUUGaggggCCGGGa- -3'
miRNA:   3'- cCCUCaCCUCCCCCU-AGCg----GGCCCag -5'
28991 3' -63 NC_006146.1 + 60135 0.66 0.619534
Target:  5'- gGGGAGggaccUGGuGGGGGGUgugUGCCaGGGg- -3'
miRNA:   3'- -CCCUC-----ACCuCCCCCUA---GCGGgCCCag -5'
28991 3' -63 NC_006146.1 + 157614 0.66 0.619534
Target:  5'- uGGGGGUaGucgcGGGcGGGcacCGCCUGGGUCu -3'
miRNA:   3'- -CCCUCAcCu---CCC-CCUa--GCGGGCCCAG- -5'
28991 3' -63 NC_006146.1 + 127965 0.66 0.619534
Target:  5'- cGGAGggcagGGAccGGGaccuaguguaccGGAUCGCcaaCCGGGUCu -3'
miRNA:   3'- cCCUCa----CCU--CCC------------CCUAGCG---GGCCCAG- -5'
28991 3' -63 NC_006146.1 + 123362 0.67 0.609925
Target:  5'- gGGGAGgucuUGGAGGGGc-UgGCCCuGGGg- -3'
miRNA:   3'- -CCCUC----ACCUCCCCcuAgCGGG-CCCag -5'
28991 3' -63 NC_006146.1 + 112111 0.67 0.608965
Target:  5'- cGGGGGUGGAGGuGGugcugguGGUgGCCUcGGUg -3'
miRNA:   3'- -CCCUCACCUCC-CC-------CUAgCGGGcCCAg -5'
28991 3' -63 NC_006146.1 + 66986 0.67 0.599373
Target:  5'- uGGGAaaaGUaGGAuGGGGuguaggaGAUgGCCCGGGUg -3'
miRNA:   3'- -CCCU---CA-CCU-CCCC-------CUAgCGGGCCCAg -5'
28991 3' -63 NC_006146.1 + 135210 0.67 0.590758
Target:  5'- uGGGGGUGGuGGGGuGA-CGCggaccaCGGGa- -3'
miRNA:   3'- -CCCUCACCuCCCC-CUaGCGg-----GCCCag -5'
28991 3' -63 NC_006146.1 + 132945 0.67 0.590758
Target:  5'- cGGAG-GGGGGGGGugguggauuAUC-UCUGGGUCc -3'
miRNA:   3'- cCCUCaCCUCCCCC---------UAGcGGGCCCAG- -5'
28991 3' -63 NC_006146.1 + 44637 0.67 0.587892
Target:  5'- uGGAGcUGGAGaGGcgucucccaagcccGGG-CGCCUGGGUCc -3'
miRNA:   3'- cCCUC-ACCUC-CC--------------CCUaGCGGGCCCAG- -5'
28991 3' -63 NC_006146.1 + 166132 0.67 0.571698
Target:  5'- aGGGAGgagacGGAGGGGGAggGaCuCUGGGc- -3'
miRNA:   3'- -CCCUCa----CCUCCCCCUagC-G-GGCCCag -5'
28991 3' -63 NC_006146.1 + 149969 0.67 0.570748
Target:  5'- uGGGAGUGGGGGccaGGGccugcagGUCGgCCGGa-- -3'
miRNA:   3'- -CCCUCACCUCC---CCC-------UAGCgGGCCcag -5'
28991 3' -63 NC_006146.1 + 135229 0.67 0.562221
Target:  5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3'
miRNA:   3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5'
28991 3' -63 NC_006146.1 + 136344 0.67 0.562221
Target:  5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3'
miRNA:   3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.