Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28991 | 3' | -63 | NC_006146.1 | + | 135972 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 136065 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 135229 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 135694 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 44637 | 0.67 | 0.587892 |
Target: 5'- uGGAGcUGGAGaGGcgucucccaagcccGGG-CGCCUGGGUCc -3' miRNA: 3'- cCCUC-ACCUC-CC--------------CCUaGCGGGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 135210 | 0.67 | 0.590758 |
Target: 5'- uGGGGGUGGuGGGGuGA-CGCggaccaCGGGa- -3' miRNA: 3'- -CCCUCACCuCCCC-CUaGCGg-----GCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 41827 | 0.67 | 0.562221 |
Target: 5'- aGGGAuGUGGGGcuGGucugCGCCCGGGcCc -3' miRNA: 3'- -CCCU-CACCUCccCCua--GCGGGCCCaG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 149969 | 0.67 | 0.570748 |
Target: 5'- uGGGAGUGGGGGccaGGGccugcagGUCGgCCGGa-- -3' miRNA: 3'- -CCCUCACCUCC---CCC-------UAGCgGGCCcag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 137459 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 136530 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 136994 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 137087 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 137180 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 136808 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 135879 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 136158 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 136344 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 136901 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 136623 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 135508 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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