miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28991 3' -63 NC_006146.1 + 23350 0.71 0.371675
Target:  5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5'
28991 3' -63 NC_006146.1 + 17194 0.71 0.371675
Target:  5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5'
28991 3' -63 NC_006146.1 + 14116 0.71 0.371675
Target:  5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5'
28991 3' -63 NC_006146.1 + 20272 0.71 0.371675
Target:  5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5'
28991 3' -63 NC_006146.1 + 137888 0.71 0.377817
Target:  5'- gGGGAGgccGGAGGGGGAgccgggaugggGCUgGGGUUc -3'
miRNA:   3'- -CCCUCa--CCUCCCCCUag---------CGGgCCCAG- -5'
28991 3' -63 NC_006146.1 + 167313 0.71 0.379363
Target:  5'- gGGGGGgggGGGGGGGGGggGCaCgCGGGg- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCUagCG-G-GCCCag -5'
28991 3' -63 NC_006146.1 + 33398 0.7 0.403057
Target:  5'- -cGGGUGGGGGGuGGccCGCCUGGG-Ca -3'
miRNA:   3'- ccCUCACCUCCC-CCuaGCGGGCCCaG- -5'
28991 3' -63 NC_006146.1 + 20413 0.7 0.403057
Target:  5'- gGGGAGUGGccAGGGGGAcggagggccUgGCCUGcGGg- -3'
miRNA:   3'- -CCCUCACC--UCCCCCU---------AgCGGGC-CCag -5'
28991 3' -63 NC_006146.1 + 30970 0.7 0.411161
Target:  5'- aGGGGGUGGcggaggugguGGcGGGGGUgC-CCCGGGUa -3'
miRNA:   3'- -CCCUCACC----------UC-CCCCUA-GcGGGCCCAg -5'
28991 3' -63 NC_006146.1 + 3766 0.7 0.41854
Target:  5'- -uGAGUGGAcGGGGGAuuucauuUCGCCCucuGGGa- -3'
miRNA:   3'- ccCUCACCU-CCCCCU-------AGCGGG---CCCag -5'
28991 3' -63 NC_006146.1 + 167258 0.7 0.419365
Target:  5'- uGGAGccggcgGGuaAGGGGGGUCGCCCuGGa- -3'
miRNA:   3'- cCCUCa-----CC--UCCCCCUAGCGGGcCCag -5'
28991 3' -63 NC_006146.1 + 33474 0.7 0.426833
Target:  5'- uGGGGGUcgggaagGGAGGGGcguGGUC-CCCGGGa- -3'
miRNA:   3'- -CCCUCA-------CCUCCCC---CUAGcGGGCCCag -5'
28991 3' -63 NC_006146.1 + 33831 0.7 0.427668
Target:  5'- cGGGGGUGGGGGaGGGAgggguguggUC-CCCGGa-- -3'
miRNA:   3'- -CCCUCACCUCC-CCCU---------AGcGGGCCcag -5'
28991 3' -63 NC_006146.1 + 144300 0.7 0.443707
Target:  5'- cGGAuGUGGGguGGGGGAUCuauccguGCCC-GGUCa -3'
miRNA:   3'- cCCU-CACCU--CCCCCUAG-------CGGGcCCAG- -5'
28991 3' -63 NC_006146.1 + 29234 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28991 3' -63 NC_006146.1 + 26156 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28991 3' -63 NC_006146.1 + 13844 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28991 3' -63 NC_006146.1 + 16922 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28991 3' -63 NC_006146.1 + 20000 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28991 3' -63 NC_006146.1 + 23078 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.