miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28991 3' -63 NC_006146.1 + 137552 0.67 0.562221
Target:  5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3'
miRNA:   3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5'
28991 3' -63 NC_006146.1 + 137366 0.67 0.562221
Target:  5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3'
miRNA:   3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5'
28991 3' -63 NC_006146.1 + 136437 0.67 0.562221
Target:  5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3'
miRNA:   3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5'
28991 3' -63 NC_006146.1 + 136344 0.67 0.562221
Target:  5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3'
miRNA:   3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5'
28991 3' -63 NC_006146.1 + 136251 0.67 0.562221
Target:  5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3'
miRNA:   3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5'
28991 3' -63 NC_006146.1 + 153530 0.68 0.543403
Target:  5'- uGGAGUGGGGGgcguGGGGcUGCuuGGGa- -3'
miRNA:   3'- cCCUCACCUCC----CCCUaGCGggCCCag -5'
28991 3' -63 NC_006146.1 + 157171 0.68 0.543403
Target:  5'- aGGAGUGGcGGGuGG---GCCCGGGg- -3'
miRNA:   3'- cCCUCACCuCCC-CCuagCGGGCCCag -5'
28991 3' -63 NC_006146.1 + 100130 0.68 0.53407
Target:  5'- aGGAGgcgGGAGcGGGGGUgCGaCCCGGa-- -3'
miRNA:   3'- cCCUCa--CCUC-CCCCUA-GC-GGGCCcag -5'
28991 3' -63 NC_006146.1 + 168108 0.68 0.524795
Target:  5'- cGGGAcgGGAGGccGGcGcgCGCCCGGGg- -3'
miRNA:   3'- -CCCUcaCCUCC--CC-CuaGCGGGCCCag -5'
28991 3' -63 NC_006146.1 + 167176 0.68 0.524795
Target:  5'- cGGGAcgGGAGGccGGcGcgCGCCCGGGg- -3'
miRNA:   3'- -CCCUcaCCUCC--CC-CuaGCGGGCCCag -5'
28991 3' -63 NC_006146.1 + 169972 0.68 0.524795
Target:  5'- cGGGAcgGGAGGccGGcGcgCGCCCGGGg- -3'
miRNA:   3'- -CCCUcaCCUCC--CC-CuaGCGGGCCCag -5'
28991 3' -63 NC_006146.1 + 169040 0.68 0.524795
Target:  5'- cGGGAcgGGAGGccGGcGcgCGCCCGGGg- -3'
miRNA:   3'- -CCCUcaCCUCC--CC-CuaGCGGGCCCag -5'
28991 3' -63 NC_006146.1 + 57131 0.68 0.524795
Target:  5'- uGGAa--GAGGGGGGU-GCCCGGGg- -3'
miRNA:   3'- cCCUcacCUCCCCCUAgCGGGCCCag -5'
28991 3' -63 NC_006146.1 + 144912 0.68 0.524795
Target:  5'- gGGGAuuagGUcGGAGGGGGcg-GCCUGGGa- -3'
miRNA:   3'- -CCCU----CA-CCUCCCCCuagCGGGCCCag -5'
28991 3' -63 NC_006146.1 + 68399 0.68 0.505524
Target:  5'- cGGGGGUGGAcauuauuuaagacGGGGaGcgCGCCUaugggGGGUa -3'
miRNA:   3'- -CCCUCACCU-------------CCCC-CuaGCGGG-----CCCAg -5'
28991 3' -63 NC_006146.1 + 165746 0.69 0.488354
Target:  5'- cGGGGGUcagGGAGGGGGAUgGgaauaUGGGUa -3'
miRNA:   3'- -CCCUCA---CCUCCCCCUAgCgg---GCCCAg -5'
28991 3' -63 NC_006146.1 + 47702 0.69 0.488354
Target:  5'- uGGGcGUGGAagagGuGGGGAgcagCGCCCGGagcucGUCg -3'
miRNA:   3'- -CCCuCACCU----C-CCCCUa---GCGGGCC-----CAG- -5'
28991 3' -63 NC_006146.1 + 127507 0.69 0.479428
Target:  5'- gGGGAGcGGGGcGGGA--GgCCGGGUCg -3'
miRNA:   3'- -CCCUCaCCUCcCCCUagCgGGCCCAG- -5'
28991 3' -63 NC_006146.1 + 16922 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28991 3' -63 NC_006146.1 + 20000 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.