miRNA display CGI


Results 1 - 20 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28991 3' -63 NC_006146.1 + 10 0.66 0.63877
Target:  5'- aGGGG-GGAGGGGGGgUUGaggggCCGGGa- -3'
miRNA:   3'- cCCUCaCCUCCCCCU-AGCg----GGCCCag -5'
28991 3' -63 NC_006146.1 + 3766 0.7 0.41854
Target:  5'- -uGAGUGGAcGGGGGAuuucauuUCGCCCucuGGGa- -3'
miRNA:   3'- ccCUCACCU-CCCCCU-------AGCGGG---CCCag -5'
28991 3' -63 NC_006146.1 + 9349 0.72 0.306702
Target:  5'- cGGGGGUGGcggcugagguccgAGGGGG--CGCCUGGG-Cg -3'
miRNA:   3'- -CCCUCACC-------------UCCCCCuaGCGGGCCCaG- -5'
28991 3' -63 NC_006146.1 + 12999 1.1 0.000767
Target:  5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3'
miRNA:   3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5'
28991 3' -63 NC_006146.1 + 13844 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28991 3' -63 NC_006146.1 + 14116 0.71 0.371675
Target:  5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5'
28991 3' -63 NC_006146.1 + 16077 1.1 0.000767
Target:  5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3'
miRNA:   3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5'
28991 3' -63 NC_006146.1 + 16922 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28991 3' -63 NC_006146.1 + 17194 0.71 0.371675
Target:  5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5'
28991 3' -63 NC_006146.1 + 19155 1.1 0.000767
Target:  5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3'
miRNA:   3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5'
28991 3' -63 NC_006146.1 + 20000 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28991 3' -63 NC_006146.1 + 20272 0.71 0.371675
Target:  5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5'
28991 3' -63 NC_006146.1 + 20413 0.7 0.403057
Target:  5'- gGGGAGUGGccAGGGGGAcggagggccUgGCCUGcGGg- -3'
miRNA:   3'- -CCCUCACC--UCCCCCU---------AgCGGGC-CCag -5'
28991 3' -63 NC_006146.1 + 22233 1.1 0.000767
Target:  5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3'
miRNA:   3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5'
28991 3' -63 NC_006146.1 + 23078 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28991 3' -63 NC_006146.1 + 23350 0.71 0.371675
Target:  5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5'
28991 3' -63 NC_006146.1 + 25311 1.1 0.000767
Target:  5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3'
miRNA:   3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5'
28991 3' -63 NC_006146.1 + 26156 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28991 3' -63 NC_006146.1 + 26427 0.71 0.371675
Target:  5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5'
28991 3' -63 NC_006146.1 + 28389 1.1 0.000767
Target:  5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3'
miRNA:   3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.