miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28991 3' -63 NC_006146.1 + 66986 0.67 0.599373
Target:  5'- uGGGAaaaGUaGGAuGGGGuguaggaGAUgGCCCGGGUg -3'
miRNA:   3'- -CCCU---CA-CCU-CCCC-------CUAgCGGGCCCAg -5'
28991 3' -63 NC_006146.1 + 68399 0.68 0.505524
Target:  5'- cGGGGGUGGAcauuauuuaagacGGGGaGcgCGCCUaugggGGGUa -3'
miRNA:   3'- -CCCUCACCU-------------CCCC-CuaGCGGG-----CCCAg -5'
28991 3' -63 NC_006146.1 + 100130 0.68 0.53407
Target:  5'- aGGAGgcgGGAGcGGGGGUgCGaCCCGGa-- -3'
miRNA:   3'- cCCUCa--CCUC-CCCCUA-GC-GGGCCcag -5'
28991 3' -63 NC_006146.1 + 112111 0.67 0.608965
Target:  5'- cGGGGGUGGAGGuGGugcugguGGUgGCCUcGGUg -3'
miRNA:   3'- -CCCUCACCUCC-CC-------CUAgCGGGcCCAg -5'
28991 3' -63 NC_006146.1 + 123362 0.67 0.609925
Target:  5'- gGGGAGgucuUGGAGGGGc-UgGCCCuGGGg- -3'
miRNA:   3'- -CCCUC----ACCUCCCCcuAgCGGG-CCCag -5'
28991 3' -63 NC_006146.1 + 127469 0.73 0.287906
Target:  5'- aGGGAGUGGGcGGcGGGGcguggcCGCCUGGGg- -3'
miRNA:   3'- -CCCUCACCU-CC-CCCUa-----GCGGGCCCag -5'
28991 3' -63 NC_006146.1 + 127507 0.69 0.479428
Target:  5'- gGGGAGcGGGGcGGGA--GgCCGGGUCg -3'
miRNA:   3'- -CCCUCaCCUCcCCCUagCgGGCCCAG- -5'
28991 3' -63 NC_006146.1 + 127965 0.66 0.619534
Target:  5'- cGGAGggcagGGAccGGGaccuaguguaccGGAUCGCcaaCCGGGUCu -3'
miRNA:   3'- cCCUCa----CCU--CCC------------CCUAGCG---GGCCCAG- -5'
28991 3' -63 NC_006146.1 + 132945 0.67 0.590758
Target:  5'- cGGAG-GGGGGGGGugguggauuAUC-UCUGGGUCc -3'
miRNA:   3'- cCCUCaCCUCCCCC---------UAGcGGGCCCAG- -5'
28991 3' -63 NC_006146.1 + 134988 0.66 0.667572
Target:  5'- aGGGGGacccgcugcUGGGuGGGGGuuGUgGCCUGGG-Ca -3'
miRNA:   3'- -CCCUC---------ACCU-CCCCC--UAgCGGGCCCaG- -5'
28991 3' -63 NC_006146.1 + 135136 0.67 0.562221
Target:  5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3'
miRNA:   3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5'
28991 3' -63 NC_006146.1 + 135210 0.67 0.590758
Target:  5'- uGGGGGUGGuGGGGuGA-CGCggaccaCGGGa- -3'
miRNA:   3'- -CCCUCACCuCCCC-CUaGCGg-----GCCCag -5'
28991 3' -63 NC_006146.1 + 135229 0.67 0.562221
Target:  5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3'
miRNA:   3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5'
28991 3' -63 NC_006146.1 + 135322 0.67 0.562221
Target:  5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3'
miRNA:   3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5'
28991 3' -63 NC_006146.1 + 135415 0.67 0.562221
Target:  5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3'
miRNA:   3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5'
28991 3' -63 NC_006146.1 + 135508 0.67 0.562221
Target:  5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3'
miRNA:   3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5'
28991 3' -63 NC_006146.1 + 135601 0.67 0.562221
Target:  5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3'
miRNA:   3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5'
28991 3' -63 NC_006146.1 + 135694 0.67 0.562221
Target:  5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3'
miRNA:   3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5'
28991 3' -63 NC_006146.1 + 135786 0.67 0.562221
Target:  5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3'
miRNA:   3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5'
28991 3' -63 NC_006146.1 + 135879 0.67 0.562221
Target:  5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3'
miRNA:   3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.