Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28991 | 3' | -63 | NC_006146.1 | + | 170414 | 0.71 | 0.349255 |
Target: 5'- cGGGGGcGGAGGGGGGggUC-CCgCGGGg- -3' miRNA: 3'- -CCCUCaCCUCCCCCU--AGcGG-GCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 169972 | 0.68 | 0.524795 |
Target: 5'- cGGGAcgGGAGGccGGcGcgCGCCCGGGg- -3' miRNA: 3'- -CCCUcaCCUCC--CC-CuaGCGGGCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 169483 | 0.71 | 0.349255 |
Target: 5'- cGGGGGcGGAGGGGGGggUC-CCgCGGGg- -3' miRNA: 3'- -CCCUCaCCUCCCCCU--AGcGG-GCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 169040 | 0.68 | 0.524795 |
Target: 5'- cGGGAcgGGAGGccGGcGcgCGCCCGGGg- -3' miRNA: 3'- -CCCUcaCCUCC--CC-CuaGCGGGCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 168551 | 0.71 | 0.349255 |
Target: 5'- cGGGGGcGGAGGGGGGggUC-CCgCGGGg- -3' miRNA: 3'- -CCCUCaCCUCCCCCU--AGcGG-GCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 168108 | 0.68 | 0.524795 |
Target: 5'- cGGGAcgGGAGGccGGcGcgCGCCCGGGg- -3' miRNA: 3'- -CCCUcaCCUCC--CC-CuaGCGGGCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 167619 | 0.71 | 0.349255 |
Target: 5'- cGGGGGcGGAGGGGGGggUC-CCgCGGGg- -3' miRNA: 3'- -CCCUCaCCUCCCCCU--AGcGG-GCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 167313 | 0.71 | 0.379363 |
Target: 5'- gGGGGGgggGGGGGGGGGggGCaCgCGGGg- -3' miRNA: 3'- -CCCUCa--CCUCCCCCUagCG-G-GCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 167258 | 0.7 | 0.419365 |
Target: 5'- uGGAGccggcgGGuaAGGGGGGUCGCCCuGGa- -3' miRNA: 3'- cCCUCa-----CC--UCCCCCUAGCGGGcCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 167176 | 0.68 | 0.524795 |
Target: 5'- cGGGAcgGGAGGccGGcGcgCGCCCGGGg- -3' miRNA: 3'- -CCCUcaCCUCC--CC-CuaGCGGGCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 166132 | 0.67 | 0.571698 |
Target: 5'- aGGGAGgagacGGAGGGGGAggGaCuCUGGGc- -3' miRNA: 3'- -CCCUCa----CCUCCCCCUagC-G-GGCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 165746 | 0.69 | 0.488354 |
Target: 5'- cGGGGGUcagGGAGGGGGAUgGgaauaUGGGUa -3' miRNA: 3'- -CCCUCA---CCUCCCCCUAgCgg---GCCCAg -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 157614 | 0.66 | 0.619534 |
Target: 5'- uGGGGGUaGucgcGGGcGGGcacCGCCUGGGUCu -3' miRNA: 3'- -CCCUCAcCu---CCC-CCUa--GCGGGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 157171 | 0.68 | 0.543403 |
Target: 5'- aGGAGUGGcGGGuGG---GCCCGGGg- -3' miRNA: 3'- cCCUCACCuCCC-CCuagCGGGCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 156241 | 0.66 | 0.677131 |
Target: 5'- cGGGAGgccGAGGGGGca-GCCaGGGa- -3' miRNA: 3'- -CCCUCac-CUCCCCCuagCGGgCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 153530 | 0.68 | 0.543403 |
Target: 5'- uGGAGUGGGGGgcguGGGGcUGCuuGGGa- -3' miRNA: 3'- cCCUCACCUCC----CCCUaGCGggCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 149969 | 0.67 | 0.570748 |
Target: 5'- uGGGAGUGGGGGccaGGGccugcagGUCGgCCGGa-- -3' miRNA: 3'- -CCCUCACCUCC---CCC-------UAGCgGGCCcag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 146602 | 0.66 | 0.667572 |
Target: 5'- -uGGGUGGAGGGGaaacagCGUCCagcccccggccaGGGUCa -3' miRNA: 3'- ccCUCACCUCCCCcua---GCGGG------------CCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 144912 | 0.68 | 0.524795 |
Target: 5'- gGGGAuuagGUcGGAGGGGGcg-GCCUGGGa- -3' miRNA: 3'- -CCCU----CA-CCUCCCCCuagCGGGCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 144300 | 0.7 | 0.443707 |
Target: 5'- cGGAuGUGGGguGGGGGAUCuauccguGCCC-GGUCa -3' miRNA: 3'- cCCU-CACCU--CCCCCUAG-------CGGGcCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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