miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28991 3' -63 NC_006146.1 + 12999 1.1 0.000767
Target:  5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3'
miRNA:   3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5'
28991 3' -63 NC_006146.1 + 144300 0.7 0.443707
Target:  5'- cGGAuGUGGGguGGGGGAUCuauccguGCCC-GGUCa -3'
miRNA:   3'- cCCU-CACCU--CCCCCUAG-------CGGGcCCAG- -5'
28991 3' -63 NC_006146.1 + 165746 0.69 0.488354
Target:  5'- cGGGGGUcagGGAGGGGGAUgGgaauaUGGGUa -3'
miRNA:   3'- -CCCUCA---CCUCCCCCUAgCgg---GCCCAg -5'
28991 3' -63 NC_006146.1 + 55024 0.66 0.677131
Target:  5'- uGGGGGcgggcgGGAuGGGGGUCGgggCCGGGg- -3'
miRNA:   3'- -CCCUCa-----CCUcCCCCUAGCg--GGCCCag -5'
28991 3' -63 NC_006146.1 + 25311 1.1 0.000767
Target:  5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3'
miRNA:   3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5'
28991 3' -63 NC_006146.1 + 28389 1.1 0.000767
Target:  5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3'
miRNA:   3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5'
28991 3' -63 NC_006146.1 + 33644 0.75 0.200254
Target:  5'- cGGGGGUGGGGGaGGGAgggguguggUC-CCCGGGa- -3'
miRNA:   3'- -CCCUCACCUCC-CCCU---------AGcGGGCCCag -5'
28991 3' -63 NC_006146.1 + 51831 0.74 0.233752
Target:  5'- cGGGGcggcGUGGAGGGGGGcUCggggccuggcccgaGCCCGGGg- -3'
miRNA:   3'- -CCCU----CACCUCCCCCU-AG--------------CGGGCCCag -5'
28991 3' -63 NC_006146.1 + 168551 0.71 0.349255
Target:  5'- cGGGGGcGGAGGGGGGggUC-CCgCGGGg- -3'
miRNA:   3'- -CCCUCaCCUCCCCCU--AGcGG-GCCCag -5'
28991 3' -63 NC_006146.1 + 33831 0.7 0.427668
Target:  5'- cGGGGGUGGGGGaGGGAgggguguggUC-CCCGGa-- -3'
miRNA:   3'- -CCCUCACCUCC-CCCU---------AGcGGGCCcag -5'
28991 3' -63 NC_006146.1 + 170414 0.71 0.349255
Target:  5'- cGGGGGcGGAGGGGGGggUC-CCgCGGGg- -3'
miRNA:   3'- -CCCUCaCCUCCCCCU--AGcGG-GCCCag -5'
28991 3' -63 NC_006146.1 + 167619 0.71 0.349255
Target:  5'- cGGGGGcGGAGGGGGGggUC-CCgCGGGg- -3'
miRNA:   3'- -CCCUCaCCUCCCCCU--AGcGG-GCCCag -5'
28991 3' -63 NC_006146.1 + 16077 1.1 0.000767
Target:  5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3'
miRNA:   3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5'
28991 3' -63 NC_006146.1 + 33398 0.7 0.403057
Target:  5'- -cGGGUGGGGGGuGGccCGCCUGGG-Ca -3'
miRNA:   3'- ccCUCACCUCCC-CCuaGCGGGCCCaG- -5'
28991 3' -63 NC_006146.1 + 19155 1.1 0.000767
Target:  5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3'
miRNA:   3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5'
28991 3' -63 NC_006146.1 + 48011 0.72 0.335562
Target:  5'- cGGGAGgcuUGGcGGGGGAggcacggcgggccgGCUCGGGUCg -3'
miRNA:   3'- -CCCUC---ACCuCCCCCUag------------CGGGCCCAG- -5'
28991 3' -63 NC_006146.1 + 33474 0.7 0.426833
Target:  5'- uGGGGGUcgggaagGGAGGGGcguGGUC-CCCGGGa- -3'
miRNA:   3'- -CCCUCA-------CCUCCCC---CUAGcGGGCCCag -5'
28991 3' -63 NC_006146.1 + 47702 0.69 0.488354
Target:  5'- uGGGcGUGGAagagGuGGGGAgcagCGCCCGGagcucGUCg -3'
miRNA:   3'- -CCCuCACCU----C-CCCCUa---GCGGGCC-----CAG- -5'
28991 3' -63 NC_006146.1 + 22233 1.1 0.000767
Target:  5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3'
miRNA:   3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5'
28991 3' -63 NC_006146.1 + 48213 0.76 0.191097
Target:  5'- gGGGAcUGGAGGGccuGGcgCGCCUGGGUg -3'
miRNA:   3'- -CCCUcACCUCCC---CCuaGCGGGCCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.