Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28991 | 3' | -63 | NC_006146.1 | + | 168108 | 0.68 | 0.524795 |
Target: 5'- cGGGAcgGGAGGccGGcGcgCGCCCGGGg- -3' miRNA: 3'- -CCCUcaCCUCC--CC-CuaGCGGGCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 167176 | 0.68 | 0.524795 |
Target: 5'- cGGGAcgGGAGGccGGcGcgCGCCCGGGg- -3' miRNA: 3'- -CCCUcaCCUCC--CC-CuaGCGGGCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 33831 | 0.7 | 0.427668 |
Target: 5'- cGGGGGUGGGGGaGGGAgggguguggUC-CCCGGa-- -3' miRNA: 3'- -CCCUCACCUCC-CCCU---------AGcGGGCCcag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 168551 | 0.71 | 0.349255 |
Target: 5'- cGGGGGcGGAGGGGGGggUC-CCgCGGGg- -3' miRNA: 3'- -CCCUCaCCUCCCCCU--AGcGG-GCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 135879 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 135229 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 165746 | 0.69 | 0.488354 |
Target: 5'- cGGGGGUcagGGAGGGGGAUgGgaauaUGGGUa -3' miRNA: 3'- -CCCUCA---CCUCCCCCUAgCgg---GCCCAg -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 167619 | 0.71 | 0.349255 |
Target: 5'- cGGGGGcGGAGGGGGGggUC-CCgCGGGg- -3' miRNA: 3'- -CCCUCaCCUCCCCCU--AGcGG-GCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 135136 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 48011 | 0.72 | 0.335562 |
Target: 5'- cGGGAGgcuUGGcGGGGGAggcacggcgggccgGCUCGGGUCg -3' miRNA: 3'- -CCCUC---ACCuCCCCCUag------------CGGGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 68399 | 0.68 | 0.505524 |
Target: 5'- cGGGGGUGGAcauuauuuaagacGGGGaGcgCGCCUaugggGGGUa -3' miRNA: 3'- -CCCUCACCU-------------CCCC-CuaGCGGG-----CCCAg -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 169040 | 0.68 | 0.524795 |
Target: 5'- cGGGAcgGGAGGccGGcGcgCGCCCGGGg- -3' miRNA: 3'- -CCCUcaCCUCC--CC-CuaGCGGGCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 47702 | 0.69 | 0.488354 |
Target: 5'- uGGGcGUGGAagagGuGGGGAgcagCGCCCGGagcucGUCg -3' miRNA: 3'- -CCCuCACCU----C-CCCCUa---GCGGGCC-----CAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 144300 | 0.7 | 0.443707 |
Target: 5'- cGGAuGUGGGguGGGGGAUCuauccguGCCC-GGUCa -3' miRNA: 3'- cCCU-CACCU--CCCCCUAG-------CGGGcCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 33474 | 0.7 | 0.426833 |
Target: 5'- uGGGGGUcgggaagGGAGGGGcguGGUC-CCCGGGa- -3' miRNA: 3'- -CCCUCA-------CCUCCCC---CUAGcGGGCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 169483 | 0.71 | 0.349255 |
Target: 5'- cGGGGGcGGAGGGGGGggUC-CCgCGGGg- -3' miRNA: 3'- -CCCUCaCCUCCCCCU--AGcGG-GCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 136251 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 135972 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 135601 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 135322 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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