Results 41 - 60 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28991 | 3' | -63 | NC_006146.1 | + | 137180 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 136344 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 135508 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 137087 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 135415 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 60135 | 0.66 | 0.619534 |
Target: 5'- gGGGAGggaccUGGuGGGGGGUgugUGCCaGGGg- -3' miRNA: 3'- -CCCUC-----ACCuCCCCCUA---GCGGgCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 135694 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 112111 | 0.67 | 0.608965 |
Target: 5'- cGGGGGUGGAGGuGGugcugguGGUgGCCUcGGUg -3' miRNA: 3'- -CCCUCACCUCC-CC-------CUAgCGGGcCCAg -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 66986 | 0.67 | 0.599373 |
Target: 5'- uGGGAaaaGUaGGAuGGGGuguaggaGAUgGCCCGGGUg -3' miRNA: 3'- -CCCU---CA-CCU-CCCC-------CUAgCGGGCCCAg -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 166132 | 0.67 | 0.571698 |
Target: 5'- aGGGAGgagacGGAGGGGGAggGaCuCUGGGc- -3' miRNA: 3'- -CCCUCa----CCUCCCCCUagC-G-GGCCCag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 149969 | 0.67 | 0.570748 |
Target: 5'- uGGGAGUGGGGGccaGGGccugcagGUCGgCCGGa-- -3' miRNA: 3'- -CCCUCACCUCC---CCC-------UAGCgGGCCcag -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 137459 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 137366 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 136994 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 136901 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 136623 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 136530 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 136251 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 136158 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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28991 | 3' | -63 | NC_006146.1 | + | 135972 | 0.67 | 0.562221 |
Target: 5'- gGGGGGUGGccGGGc--CGCugCCGGGUCc -3' miRNA: 3'- -CCCUCACCucCCCcuaGCG--GGCCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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