miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28991 3' -63 NC_006146.1 + 20413 0.7 0.403057
Target:  5'- gGGGAGUGGccAGGGGGAcggagggccUgGCCUGcGGg- -3'
miRNA:   3'- -CCCUCACC--UCCCCCU---------AgCGGGC-CCag -5'
28991 3' -63 NC_006146.1 + 16922 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28991 3' -63 NC_006146.1 + 20000 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28991 3' -63 NC_006146.1 + 23078 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28991 3' -63 NC_006146.1 + 26156 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28991 3' -63 NC_006146.1 + 29234 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28991 3' -63 NC_006146.1 + 167258 0.7 0.419365
Target:  5'- uGGAGccggcgGGuaAGGGGGGUCGCCCuGGa- -3'
miRNA:   3'- cCCUCa-----CC--UCCCCCUAGCGGGcCCag -5'
28991 3' -63 NC_006146.1 + 3766 0.7 0.41854
Target:  5'- -uGAGUGGAcGGGGGAuuucauuUCGCCCucuGGGa- -3'
miRNA:   3'- ccCUCACCU-CCCCCU-------AGCGGG---CCCag -5'
28991 3' -63 NC_006146.1 + 30970 0.7 0.411161
Target:  5'- aGGGGGUGGcggaggugguGGcGGGGGUgC-CCCGGGUa -3'
miRNA:   3'- -CCCUCACC----------UC-CCCCUA-GcGGGCCCAg -5'
28991 3' -63 NC_006146.1 + 13844 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28991 3' -63 NC_006146.1 + 127507 0.69 0.479428
Target:  5'- gGGGAGcGGGGcGGGA--GgCCGGGUCg -3'
miRNA:   3'- -CCCUCaCCUCcCCCUagCgGGCCCAG- -5'
28991 3' -63 NC_006146.1 + 144912 0.68 0.524795
Target:  5'- gGGGAuuagGUcGGAGGGGGcg-GCCUGGGa- -3'
miRNA:   3'- -CCCU----CA-CCUCCCCCuagCGGGCCCag -5'
28991 3' -63 NC_006146.1 + 134988 0.66 0.667572
Target:  5'- aGGGGGacccgcugcUGGGuGGGGGuuGUgGCCUGGG-Ca -3'
miRNA:   3'- -CCCUC---------ACCU-CCCCC--UAgCGGGCCCaG- -5'
28991 3' -63 NC_006146.1 + 61252 0.66 0.63877
Target:  5'- gGGGGGUGGugugccauAGaGGGGAgggagaccgauaUCGCCCaGGa- -3'
miRNA:   3'- -CCCUCACC--------UC-CCCCU------------AGCGGGcCCag -5'
28991 3' -63 NC_006146.1 + 123362 0.67 0.609925
Target:  5'- gGGGAGgucuUGGAGGGGc-UgGCCCuGGGg- -3'
miRNA:   3'- -CCCUC----ACCUCCCCcuAgCGGG-CCCag -5'
28991 3' -63 NC_006146.1 + 135210 0.67 0.590758
Target:  5'- uGGGGGUGGuGGGGuGA-CGCggaccaCGGGa- -3'
miRNA:   3'- -CCCUCACCuCCCC-CUaGCGg-----GCCCag -5'
28991 3' -63 NC_006146.1 + 41827 0.67 0.562221
Target:  5'- aGGGAuGUGGGGcuGGucugCGCCCGGGcCc -3'
miRNA:   3'- -CCCU-CACCUCccCCua--GCGGGCCCaG- -5'
28991 3' -63 NC_006146.1 + 157171 0.68 0.543403
Target:  5'- aGGAGUGGcGGGuGG---GCCCGGGg- -3'
miRNA:   3'- cCCUCACCuCCC-CCuagCGGGCCCag -5'
28991 3' -63 NC_006146.1 + 100130 0.68 0.53407
Target:  5'- aGGAGgcgGGAGcGGGGGUgCGaCCCGGa-- -3'
miRNA:   3'- cCCUCa--CCUC-CCCCUA-GC-GGGCCcag -5'
28991 3' -63 NC_006146.1 + 57131 0.68 0.524795
Target:  5'- uGGAa--GAGGGGGGU-GCCCGGGg- -3'
miRNA:   3'- cCCUcacCUCCCCCUAgCGGGCCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.