miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28991 5' -54.7 NC_006146.1 + 46710 0.66 0.953677
Target:  5'- aAGAGUCggccgcGGCGG--CUCCGAGGCg -3'
miRNA:   3'- gUCUCAGac----UCGCUagGAGGCUCUGa -5'
28991 5' -54.7 NC_006146.1 + 33475 0.66 0.949596
Target:  5'- gGGGGUCgggaagggagGGGCGugGUCC-CCGGGACc -3'
miRNA:   3'- gUCUCAGa---------CUCGC--UAGGaGGCUCUGa -5'
28991 5' -54.7 NC_006146.1 + 51800 0.66 0.943491
Target:  5'- aGGGGUCUGAgGCGccaagccacccguUCC-CCGGGGCg -3'
miRNA:   3'- gUCUCAGACU-CGCu------------AGGaGGCUCUGa -5'
28991 5' -54.7 NC_006146.1 + 54240 0.66 0.942581
Target:  5'- gCAGAGccUCUGGGCGgccccGgucaggcgggaaacgUCCUCCGAGAg- -3'
miRNA:   3'- -GUCUC--AGACUCGC-----U---------------AGGAGGCUCUga -5'
28991 5' -54.7 NC_006146.1 + 99710 0.67 0.935455
Target:  5'- gGGAGUgaggaucuucaggCUGAcGCGGUgCUCCGAGgACg -3'
miRNA:   3'- gUCUCA-------------GACU-CGCUAgGAGGCUC-UGa -5'
28991 5' -54.7 NC_006146.1 + 54634 0.67 0.930921
Target:  5'- gAG-GUCUcGGGCGuaaUCUCCGAGACc -3'
miRNA:   3'- gUCuCAGA-CUCGCua-GGAGGCUCUGa -5'
28991 5' -54.7 NC_006146.1 + 95299 0.67 0.925656
Target:  5'- uCGGGcGUCUcGGGCGccgCCUUCGAGGCc -3'
miRNA:   3'- -GUCU-CAGA-CUCGCua-GGAGGCUCUGa -5'
28991 5' -54.7 NC_006146.1 + 97914 0.67 0.920151
Target:  5'- aGGAG-CUGAgGCGAgcccCCUCgGAGGCc -3'
miRNA:   3'- gUCUCaGACU-CGCUa---GGAGgCUCUGa -5'
28991 5' -54.7 NC_006146.1 + 49016 0.67 0.914406
Target:  5'- aGGAGcCgcaGGGCG-UUCUCCGGGGCg -3'
miRNA:   3'- gUCUCaGa--CUCGCuAGGAGGCUCUGa -5'
28991 5' -54.7 NC_006146.1 + 131216 0.7 0.79274
Target:  5'- aGGAGgcugaggCUGAGCGG-CCUgCGGGGCg -3'
miRNA:   3'- gUCUCa------GACUCGCUaGGAgGCUCUGa -5'
28991 5' -54.7 NC_006146.1 + 51897 0.73 0.645152
Target:  5'- uGGAGgCUGcgucGGCGGgggCCUCCGAGGCa -3'
miRNA:   3'- gUCUCaGAC----UCGCUa--GGAGGCUCUGa -5'
28991 5' -54.7 NC_006146.1 + 13033 1.07 0.005955
Target:  5'- gCAGAGUCUGAGCGAUCCUCCGAGACUc -3'
miRNA:   3'- -GUCUCAGACUCGCUAGGAGGCUCUGA- -5'
28991 5' -54.7 NC_006146.1 + 16111 1.07 0.005955
Target:  5'- gCAGAGUCUGAGCGAUCCUCCGAGACUc -3'
miRNA:   3'- -GUCUCAGACUCGCUAGGAGGCUCUGA- -5'
28991 5' -54.7 NC_006146.1 + 22267 1.07 0.005955
Target:  5'- gCAGAGUCUGAGCGAUCCUCCGAGACUc -3'
miRNA:   3'- -GUCUCAGACUCGCUAGGAGGCUCUGA- -5'
28991 5' -54.7 NC_006146.1 + 19189 1.07 0.005955
Target:  5'- gCAGAGUCUGAGCGAUCCUCCGAGACUc -3'
miRNA:   3'- -GUCUCAGACUCGCUAGGAGGCUCUGA- -5'
28991 5' -54.7 NC_006146.1 + 25345 1.07 0.005955
Target:  5'- gCAGAGUCUGAGCGAUCCUCCGAGACUc -3'
miRNA:   3'- -GUCUCAGACUCGCUAGGAGGCUCUGA- -5'
28991 5' -54.7 NC_006146.1 + 28423 1.07 0.005955
Target:  5'- gCAGAGUCUGAGCGAUCCUCCGAGACUc -3'
miRNA:   3'- -GUCUCAGACUCGCUAGGAGGCUCUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.