Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28992 | 3' | -50.4 | NC_006146.1 | + | 19490 | 1.08 | 0.011501 |
Target: 5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3' miRNA: 3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 25646 | 1.08 | 0.011501 |
Target: 5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3' miRNA: 3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 28724 | 1.08 | 0.011501 |
Target: 5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3' miRNA: 3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 13334 | 1.08 | 0.011501 |
Target: 5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3' miRNA: 3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 16412 | 1.08 | 0.011501 |
Target: 5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3' miRNA: 3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 22568 | 1.08 | 0.011501 |
Target: 5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3' miRNA: 3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 169746 | 0.76 | 0.709717 |
Target: 5'- -gGAGCCCCGggGcGGCCCGGGGAc-- -3' miRNA: 3'- gaCUCGGGGCaaC-UUGGGUUUCUuac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 167882 | 0.76 | 0.709717 |
Target: 5'- -gGAGCCCCGggGcGGCCCGGGGAc-- -3' miRNA: 3'- gaCUCGGGGCaaC-UUGGGUUUCUuac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 168814 | 0.76 | 0.709717 |
Target: 5'- -gGAGCCCCGggGcGGCCCGGGGAc-- -3' miRNA: 3'- gaCUCGGGGCaaC-UUGGGUUUCUuac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 159021 | 0.75 | 0.78942 |
Target: 5'- -cGGGCCCCGUUGGugCCAGu----- -3' miRNA: 3'- gaCUCGGGGCAACUugGGUUucuuac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 53828 | 0.75 | 0.750463 |
Target: 5'- aCUGAGCCCCGcgauccUGccGACCCGGAGAc-- -3' miRNA: 3'- -GACUCGGGGCa-----AC--UUGGGUUUCUuac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 67907 | 0.73 | 0.851385 |
Target: 5'- aCUGGGCCUCGUgGGAgCCGAAGGu-- -3' miRNA: 3'- -GACUCGGGGCAaCUUgGGUUUCUuac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 9663 | 0.73 | 0.851385 |
Target: 5'- gUGuGGCCCCGcggGAACCCAAGGcgcGUGg -3' miRNA: 3'- gAC-UCGGGGCaa-CUUGGGUUUCu--UAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 157160 | 0.72 | 0.902983 |
Target: 5'- gUGGGCCCgGggGAGCCCAGGa---- -3' miRNA: 3'- gACUCGGGgCaaCUUGGGUUUcuuac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 52272 | 0.72 | 0.889431 |
Target: 5'- aCUGGGCCCCGggc-GCCCccacguacuGGAGGAUGu -3' miRNA: 3'- -GACUCGGGGCaacuUGGG---------UUUCUUAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 128453 | 0.71 | 0.927061 |
Target: 5'- gUGGGCCUcaCGUagUGGGCCCAGAGGu-- -3' miRNA: 3'- gACUCGGG--GCA--ACUUGGGUUUCUuac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 108349 | 0.7 | 0.963027 |
Target: 5'- -gGAGCCCCGc-GGACCCAcauGAAc- -3' miRNA: 3'- gaCUCGGGGCaaCUUGGGUuu-CUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 119527 | 0.7 | 0.963027 |
Target: 5'- cCUGGGCgCCGccgggagGGGCCCGGGGGAg- -3' miRNA: 3'- -GACUCGgGGCaa-----CUUGGGUUUCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 82758 | 0.7 | 0.963027 |
Target: 5'- -gGAGgC-CGUUGGGCCCAGGGggUu -3' miRNA: 3'- gaCUCgGgGCAACUUGGGUUUCuuAc -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 34578 | 0.7 | 0.947043 |
Target: 5'- uCUGcGCCCCGUUauACCUAGuGggUGg -3' miRNA: 3'- -GACuCGGGGCAAcuUGGGUUuCuuAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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