miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28992 3' -50.4 NC_006146.1 + 19490 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 13334 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 16412 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 22568 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 25646 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 28724 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 167882 0.76 0.709717
Target:  5'- -gGAGCCCCGggGcGGCCCGGGGAc-- -3'
miRNA:   3'- gaCUCGGGGCaaC-UUGGGUUUCUuac -5'
28992 3' -50.4 NC_006146.1 + 169746 0.76 0.709717
Target:  5'- -gGAGCCCCGggGcGGCCCGGGGAc-- -3'
miRNA:   3'- gaCUCGGGGCaaC-UUGGGUUUCUuac -5'
28992 3' -50.4 NC_006146.1 + 168814 0.76 0.709717
Target:  5'- -gGAGCCCCGggGcGGCCCGGGGAc-- -3'
miRNA:   3'- gaCUCGGGGCaaC-UUGGGUUUCUuac -5'
28992 3' -50.4 NC_006146.1 + 53828 0.75 0.750463
Target:  5'- aCUGAGCCCCGcgauccUGccGACCCGGAGAc-- -3'
miRNA:   3'- -GACUCGGGGCa-----AC--UUGGGUUUCUuac -5'
28992 3' -50.4 NC_006146.1 + 159021 0.75 0.78942
Target:  5'- -cGGGCCCCGUUGGugCCAGu----- -3'
miRNA:   3'- gaCUCGGGGCAACUugGGUUucuuac -5'
28992 3' -50.4 NC_006146.1 + 9663 0.73 0.851385
Target:  5'- gUGuGGCCCCGcggGAACCCAAGGcgcGUGg -3'
miRNA:   3'- gAC-UCGGGGCaa-CUUGGGUUUCu--UAC- -5'
28992 3' -50.4 NC_006146.1 + 67907 0.73 0.851385
Target:  5'- aCUGGGCCUCGUgGGAgCCGAAGGu-- -3'
miRNA:   3'- -GACUCGGGGCAaCUUgGGUUUCUuac -5'
28992 3' -50.4 NC_006146.1 + 52272 0.72 0.889431
Target:  5'- aCUGGGCCCCGggc-GCCCccacguacuGGAGGAUGu -3'
miRNA:   3'- -GACUCGGGGCaacuUGGG---------UUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 157160 0.72 0.902983
Target:  5'- gUGGGCCCgGggGAGCCCAGGa---- -3'
miRNA:   3'- gACUCGGGgCaaCUUGGGUUUcuuac -5'
28992 3' -50.4 NC_006146.1 + 128453 0.71 0.927061
Target:  5'- gUGGGCCUcaCGUagUGGGCCCAGAGGu-- -3'
miRNA:   3'- gACUCGGG--GCA--ACUUGGGUUUCUuac -5'
28992 3' -50.4 NC_006146.1 + 34578 0.7 0.947043
Target:  5'- uCUGcGCCCCGUUauACCUAGuGggUGg -3'
miRNA:   3'- -GACuCGGGGCAAcuUGGGUUuCuuAC- -5'
28992 3' -50.4 NC_006146.1 + 143290 0.7 0.951406
Target:  5'- cCUG-GCCaCCcagUGGACCCGGAGAGUc -3'
miRNA:   3'- -GACuCGG-GGca-ACUUGGGUUUCUUAc -5'
28992 3' -50.4 NC_006146.1 + 119527 0.7 0.963027
Target:  5'- cCUGGGCgCCGccgggagGGGCCCGGGGGAg- -3'
miRNA:   3'- -GACUCGgGGCaa-----CUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 82758 0.7 0.963027
Target:  5'- -gGAGgC-CGUUGGGCCCAGGGggUu -3'
miRNA:   3'- gaCUCgGgGCAACUUGGGUUUCuuAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.