miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28992 3' -50.4 NC_006146.1 + 108349 0.7 0.963027
Target:  5'- -gGAGCCCCGc-GGACCCAcauGAAc- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGUuu-CUUac -5'
28992 3' -50.4 NC_006146.1 + 44273 0.7 0.963027
Target:  5'- -cGGGCCCCGggGuguGCCCAccGAc-- -3'
miRNA:   3'- gaCUCGGGGCaaCu--UGGGUuuCUuac -5'
28992 3' -50.4 NC_006146.1 + 67569 0.69 0.97227
Target:  5'- -cGAGCCCCccuccccguacucGUgGGACCCGgaccccGAGGAUGg -3'
miRNA:   3'- gaCUCGGGG-------------CAaCUUGGGU------UUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 169884 0.69 0.972555
Target:  5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3'
miRNA:   3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5'
28992 3' -50.4 NC_006146.1 + 105876 0.69 0.972555
Target:  5'- gUGGGCCCUG--GGACCguaGAAGAGUGc -3'
miRNA:   3'- gACUCGGGGCaaCUUGGg--UUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 170815 0.69 0.972555
Target:  5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3'
miRNA:   3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5'
28992 3' -50.4 NC_006146.1 + 168952 0.69 0.972555
Target:  5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3'
miRNA:   3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5'
28992 3' -50.4 NC_006146.1 + 168020 0.69 0.972555
Target:  5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3'
miRNA:   3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5'
28992 3' -50.4 NC_006146.1 + 18984 0.69 0.975296
Target:  5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 25140 0.69 0.975296
Target:  5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 12828 0.69 0.975296
Target:  5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 22062 0.69 0.975296
Target:  5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 15907 0.69 0.975296
Target:  5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 28218 0.69 0.975296
Target:  5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 125806 0.69 0.977832
Target:  5'- cCUGAGgCCCGccaGAccaagACCCAGAGGAa- -3'
miRNA:   3'- -GACUCgGGGCaa-CU-----UGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 15069 0.69 0.977832
Target:  5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 27381 0.69 0.977832
Target:  5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 18147 0.69 0.977832
Target:  5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 21225 0.69 0.977832
Target:  5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 24303 0.69 0.977832
Target:  5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.