miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28992 3' -50.4 NC_006146.1 + 16488 0.67 0.989205
Target:  5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 19566 0.67 0.989205
Target:  5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 22644 0.67 0.989205
Target:  5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 25722 0.67 0.989205
Target:  5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 28800 0.67 0.989205
Target:  5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 148024 0.67 0.989063
Target:  5'- -gGGGCCuCUGUUGAgaucggcguugggGCCCAugaugaugagGAGGAUGa -3'
miRNA:   3'- gaCUCGG-GGCAACU-------------UGGGU----------UUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 43691 0.68 0.988333
Target:  5'- gCUGGGCCCCGccgccgGAGCcggugucaacggccgCCGAGGAGg- -3'
miRNA:   3'- -GACUCGGGGCaa----CUUG---------------GGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 170570 0.68 0.987722
Target:  5'- ---uGCuCCCGUUG-GCCgGGAGAAUGa -3'
miRNA:   3'- gacuCG-GGGCAACuUGGgUUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 42218 0.68 0.987722
Target:  5'- gUGAGCCC----GGGCCCAGAGGGa- -3'
miRNA:   3'- gACUCGGGgcaaCUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 57523 0.68 0.986086
Target:  5'- -gGGGCCCCGcc---CCCAGAGAGc- -3'
miRNA:   3'- gaCUCGGGGCaacuuGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 54136 0.68 0.986086
Target:  5'- gUGAGCCCCugcGUccGGACCuCGAGGAGc- -3'
miRNA:   3'- gACUCGGGG---CAa-CUUGG-GUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 163056 0.68 0.982319
Target:  5'- gCUG-GCaCCCGcUGGACCCGgcccuGGGggUGu -3'
miRNA:   3'- -GACuCG-GGGCaACUUGGGU-----UUCuuAC- -5'
28992 3' -50.4 NC_006146.1 + 150291 0.68 0.982319
Target:  5'- -gGuGCCCCcggUGAGCCUGAAGGAc- -3'
miRNA:   3'- gaCuCGGGGca-ACUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 158733 0.68 0.98017
Target:  5'- -gGAGCCCCag-GGACCCcGGGAc-- -3'
miRNA:   3'- gaCUCGGGGcaaCUUGGGuUUCUuac -5'
28992 3' -50.4 NC_006146.1 + 27381 0.69 0.977832
Target:  5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 24303 0.69 0.977832
Target:  5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 18147 0.69 0.977832
Target:  5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 15069 0.69 0.977832
Target:  5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 125806 0.69 0.977832
Target:  5'- cCUGAGgCCCGccaGAccaagACCCAGAGGAa- -3'
miRNA:   3'- -GACUCgGGGCaa-CU-----UGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 21225 0.69 0.977832
Target:  5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.