Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28992 | 3' | -50.4 | NC_006146.1 | + | 12828 | 0.69 | 0.975296 |
Target: 5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 15907 | 0.69 | 0.975296 |
Target: 5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 18984 | 0.69 | 0.975296 |
Target: 5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 22062 | 0.69 | 0.975296 |
Target: 5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 28218 | 0.69 | 0.975296 |
Target: 5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 25140 | 0.69 | 0.975296 |
Target: 5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 169884 | 0.69 | 0.972555 |
Target: 5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3' miRNA: 3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 170815 | 0.69 | 0.972555 |
Target: 5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3' miRNA: 3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 105876 | 0.69 | 0.972555 |
Target: 5'- gUGGGCCCUG--GGACCguaGAAGAGUGc -3' miRNA: 3'- gACUCGGGGCaaCUUGGg--UUUCUUAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 168952 | 0.69 | 0.972555 |
Target: 5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3' miRNA: 3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 168020 | 0.69 | 0.972555 |
Target: 5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3' miRNA: 3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 67569 | 0.69 | 0.97227 |
Target: 5'- -cGAGCCCCccuccccguacucGUgGGACCCGgaccccGAGGAUGg -3' miRNA: 3'- gaCUCGGGG-------------CAaCUUGGGU------UUCUUAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 119527 | 0.7 | 0.963027 |
Target: 5'- cCUGGGCgCCGccgggagGGGCCCGGGGGAg- -3' miRNA: 3'- -GACUCGgGGCaa-----CUUGGGUUUCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 82758 | 0.7 | 0.963027 |
Target: 5'- -gGAGgC-CGUUGGGCCCAGGGggUu -3' miRNA: 3'- gaCUCgGgGCAACUUGGGUUUCuuAc -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 108349 | 0.7 | 0.963027 |
Target: 5'- -gGAGCCCCGc-GGACCCAcauGAAc- -3' miRNA: 3'- gaCUCGGGGCaaCUUGGGUuu-CUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 44273 | 0.7 | 0.963027 |
Target: 5'- -cGGGCCCCGggGuguGCCCAccGAc-- -3' miRNA: 3'- gaCUCGGGGCaaCu--UGGGUuuCUuac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 143290 | 0.7 | 0.951406 |
Target: 5'- cCUG-GCCaCCcagUGGACCCGGAGAGUc -3' miRNA: 3'- -GACuCGG-GGca-ACUUGGGUUUCUUAc -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 34578 | 0.7 | 0.947043 |
Target: 5'- uCUGcGCCCCGUUauACCUAGuGggUGg -3' miRNA: 3'- -GACuCGGGGCAAcuUGGGUUuCuuAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 128453 | 0.71 | 0.927061 |
Target: 5'- gUGGGCCUcaCGUagUGGGCCCAGAGGu-- -3' miRNA: 3'- gACUCGGG--GCA--ACUUGGGUUUCUuac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 157160 | 0.72 | 0.902983 |
Target: 5'- gUGGGCCCgGggGAGCCCAGGa---- -3' miRNA: 3'- gACUCGGGgCaaCUUGGGUUUcuuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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