Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28992 | 3' | -50.4 | NC_006146.1 | + | 69489 | 0.66 | 0.995412 |
Target: 5'- aCUGGGCCCCa--GAACCCucuuuaGGUGg -3' miRNA: 3'- -GACUCGGGGcaaCUUGGGuuuc--UUAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 75718 | 0.67 | 0.990545 |
Target: 5'- -gGAGCCUCGgUGGGCgCCAuAGGAa- -3' miRNA: 3'- gaCUCGGGGCaACUUG-GGUuUCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 82758 | 0.7 | 0.963027 |
Target: 5'- -gGAGgC-CGUUGGGCCCAGGGggUu -3' miRNA: 3'- gaCUCgGgGCAACUUGGGUUUCuuAc -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 97313 | 0.67 | 0.993795 |
Target: 5'- ---uGCCCCG-UGAGCUCGaccggaggaGAGGAUGg -3' miRNA: 3'- gacuCGGGGCaACUUGGGU---------UUCUUAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 100204 | 0.66 | 0.996667 |
Target: 5'- cCUGAGCuCCCGUU---CCCAGcgcAGAAa- -3' miRNA: 3'- -GACUCG-GGGCAAcuuGGGUU---UCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 105876 | 0.69 | 0.972555 |
Target: 5'- gUGGGCCCUG--GGACCguaGAAGAGUGc -3' miRNA: 3'- gACUCGGGGCaaCUUGGg--UUUCUUAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 108349 | 0.7 | 0.963027 |
Target: 5'- -gGAGCCCCGc-GGACCCAcauGAAc- -3' miRNA: 3'- gaCUCGGGGCaaCUUGGGUuu-CUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 115239 | 0.66 | 0.995412 |
Target: 5'- -gGAGCCCaGcUGAgagGCCCAGGGAu-- -3' miRNA: 3'- gaCUCGGGgCaACU---UGGGUUUCUuac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 119527 | 0.7 | 0.963027 |
Target: 5'- cCUGGGCgCCGccgggagGGGCCCGGGGGAg- -3' miRNA: 3'- -GACUCGgGGCaa-----CUUGGGUUUCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 119849 | 0.66 | 0.99608 |
Target: 5'- gUGAugGCCCuUGUccUGAucuCCCGGAGggUGg -3' miRNA: 3'- gACU--CGGG-GCA--ACUu--GGGUUUCuuAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 120187 | 0.67 | 0.993795 |
Target: 5'- cCUGGGCCuCCGU---GCCCAAGauGUGu -3' miRNA: 3'- -GACUCGG-GGCAacuUGGGUUUcuUAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 125806 | 0.69 | 0.977832 |
Target: 5'- cCUGAGgCCCGccaGAccaagACCCAGAGGAa- -3' miRNA: 3'- -GACUCgGGGCaa-CU-----UGGGUUUCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 128453 | 0.71 | 0.927061 |
Target: 5'- gUGGGCCUcaCGUagUGGGCCCAGAGGu-- -3' miRNA: 3'- gACUCGGG--GCA--ACUUGGGUUUCUuac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 134697 | 0.66 | 0.99534 |
Target: 5'- uUGcGCuCCCGggGAGCCCAggugucuGAGAAc- -3' miRNA: 3'- gACuCG-GGGCaaCUUGGGU-------UUCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 143290 | 0.7 | 0.951406 |
Target: 5'- cCUG-GCCaCCcagUGGACCCGGAGAGUc -3' miRNA: 3'- -GACuCGG-GGca-ACUUGGGUUUCUUAc -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 148024 | 0.67 | 0.989063 |
Target: 5'- -gGGGCCuCUGUUGAgaucggcguugggGCCCAugaugaugagGAGGAUGa -3' miRNA: 3'- gaCUCGG-GGCAACU-------------UGGGU----------UUCUUAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 150291 | 0.68 | 0.982319 |
Target: 5'- -gGuGCCCCcggUGAGCCUGAAGGAc- -3' miRNA: 3'- gaCuCGGGGca-ACUUGGGUUUCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 151067 | 0.67 | 0.992831 |
Target: 5'- gCUGAGguCCCUGaUGAGCUgGAAGAAg- -3' miRNA: 3'- -GACUC--GGGGCaACUUGGgUUUCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 157160 | 0.72 | 0.902983 |
Target: 5'- gUGGGCCCgGggGAGCCCAGGa---- -3' miRNA: 3'- gACUCGGGgCaaCUUGGGUUUcuuac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 158733 | 0.68 | 0.98017 |
Target: 5'- -gGAGCCCCag-GGACCCcGGGAc-- -3' miRNA: 3'- gaCUCGGGGcaaCUUGGGuUUCUuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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