miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28992 3' -50.4 NC_006146.1 + 170815 0.69 0.972555
Target:  5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3'
miRNA:   3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5'
28992 3' -50.4 NC_006146.1 + 170615 0.67 0.993795
Target:  5'- -cGGGCCCCGcgGGACCCc------- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGuuucuuac -5'
28992 3' -50.4 NC_006146.1 + 170570 0.68 0.987722
Target:  5'- ---uGCuCCCGUUG-GCCgGGAGAAUGa -3'
miRNA:   3'- gacuCG-GGGCAACuUGGgUUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 169884 0.69 0.972555
Target:  5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3'
miRNA:   3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5'
28992 3' -50.4 NC_006146.1 + 169746 0.76 0.709717
Target:  5'- -gGAGCCCCGggGcGGCCCGGGGAc-- -3'
miRNA:   3'- gaCUCGGGGCaaC-UUGGGUUUCUuac -5'
28992 3' -50.4 NC_006146.1 + 169684 0.67 0.993795
Target:  5'- -cGGGCCCCGcgGGACCCc------- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGuuucuuac -5'
28992 3' -50.4 NC_006146.1 + 168952 0.69 0.972555
Target:  5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3'
miRNA:   3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5'
28992 3' -50.4 NC_006146.1 + 168814 0.76 0.709717
Target:  5'- -gGAGCCCCGggGcGGCCCGGGGAc-- -3'
miRNA:   3'- gaCUCGGGGCaaC-UUGGGUUUCUuac -5'
28992 3' -50.4 NC_006146.1 + 168752 0.67 0.993795
Target:  5'- -cGGGCCCCGcgGGACCCc------- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGuuucuuac -5'
28992 3' -50.4 NC_006146.1 + 168020 0.69 0.972555
Target:  5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3'
miRNA:   3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5'
28992 3' -50.4 NC_006146.1 + 167882 0.76 0.709717
Target:  5'- -gGAGCCCCGggGcGGCCCGGGGAc-- -3'
miRNA:   3'- gaCUCGGGGCaaC-UUGGGUUUCUuac -5'
28992 3' -50.4 NC_006146.1 + 167820 0.67 0.993795
Target:  5'- -cGGGCCCCGcgGGACCCc------- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGuuucuuac -5'
28992 3' -50.4 NC_006146.1 + 163056 0.68 0.982319
Target:  5'- gCUG-GCaCCCGcUGGACCCGgcccuGGGggUGu -3'
miRNA:   3'- -GACuCG-GGGCaACUUGGGU-----UUCuuAC- -5'
28992 3' -50.4 NC_006146.1 + 159021 0.75 0.78942
Target:  5'- -cGGGCCCCGUUGGugCCAGu----- -3'
miRNA:   3'- gaCUCGGGGCAACUugGGUUucuuac -5'
28992 3' -50.4 NC_006146.1 + 158733 0.68 0.98017
Target:  5'- -gGAGCCCCag-GGACCCcGGGAc-- -3'
miRNA:   3'- gaCUCGGGGcaaCUUGGGuUUCUuac -5'
28992 3' -50.4 NC_006146.1 + 157160 0.72 0.902983
Target:  5'- gUGGGCCCgGggGAGCCCAGGa---- -3'
miRNA:   3'- gACUCGGGgCaaCUUGGGUUUcuuac -5'
28992 3' -50.4 NC_006146.1 + 151067 0.67 0.992831
Target:  5'- gCUGAGguCCCUGaUGAGCUgGAAGAAg- -3'
miRNA:   3'- -GACUC--GGGGCaACUUGGgUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 150291 0.68 0.982319
Target:  5'- -gGuGCCCCcggUGAGCCUGAAGGAc- -3'
miRNA:   3'- gaCuCGGGGca-ACUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 148024 0.67 0.989063
Target:  5'- -gGGGCCuCUGUUGAgaucggcguugggGCCCAugaugaugagGAGGAUGa -3'
miRNA:   3'- gaCUCGG-GGCAACU-------------UGGGU----------UUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 143290 0.7 0.951406
Target:  5'- cCUG-GCCaCCcagUGGACCCGGAGAGUc -3'
miRNA:   3'- -GACuCGG-GGca-ACUUGGGUUUCUUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.