Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28992 | 3' | -50.4 | NC_006146.1 | + | 134697 | 0.66 | 0.99534 |
Target: 5'- uUGcGCuCCCGggGAGCCCAggugucuGAGAAc- -3' miRNA: 3'- gACuCG-GGGCaaCUUGGGU-------UUCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 128453 | 0.71 | 0.927061 |
Target: 5'- gUGGGCCUcaCGUagUGGGCCCAGAGGu-- -3' miRNA: 3'- gACUCGGG--GCA--ACUUGGGUUUCUuac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 125806 | 0.69 | 0.977832 |
Target: 5'- cCUGAGgCCCGccaGAccaagACCCAGAGGAa- -3' miRNA: 3'- -GACUCgGGGCaa-CU-----UGGGUUUCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 120187 | 0.67 | 0.993795 |
Target: 5'- cCUGGGCCuCCGU---GCCCAAGauGUGu -3' miRNA: 3'- -GACUCGG-GGCAacuUGGGUUUcuUAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 119849 | 0.66 | 0.99608 |
Target: 5'- gUGAugGCCCuUGUccUGAucuCCCGGAGggUGg -3' miRNA: 3'- gACU--CGGG-GCA--ACUu--GGGUUUCuuAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 119527 | 0.7 | 0.963027 |
Target: 5'- cCUGGGCgCCGccgggagGGGCCCGGGGGAg- -3' miRNA: 3'- -GACUCGgGGCaa-----CUUGGGUUUCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 115239 | 0.66 | 0.995412 |
Target: 5'- -gGAGCCCaGcUGAgagGCCCAGGGAu-- -3' miRNA: 3'- gaCUCGGGgCaACU---UGGGUUUCUuac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 108349 | 0.7 | 0.963027 |
Target: 5'- -gGAGCCCCGc-GGACCCAcauGAAc- -3' miRNA: 3'- gaCUCGGGGCaaCUUGGGUuu-CUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 105876 | 0.69 | 0.972555 |
Target: 5'- gUGGGCCCUG--GGACCguaGAAGAGUGc -3' miRNA: 3'- gACUCGGGGCaaCUUGGg--UUUCUUAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 100204 | 0.66 | 0.996667 |
Target: 5'- cCUGAGCuCCCGUU---CCCAGcgcAGAAa- -3' miRNA: 3'- -GACUCG-GGGCAAcuuGGGUU---UCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 97313 | 0.67 | 0.993795 |
Target: 5'- ---uGCCCCG-UGAGCUCGaccggaggaGAGGAUGg -3' miRNA: 3'- gacuCGGGGCaACUUGGGU---------UUCUUAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 82758 | 0.7 | 0.963027 |
Target: 5'- -gGAGgC-CGUUGGGCCCAGGGggUu -3' miRNA: 3'- gaCUCgGgGCAACUUGGGUUUCuuAc -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 75718 | 0.67 | 0.990545 |
Target: 5'- -gGAGCCUCGgUGGGCgCCAuAGGAa- -3' miRNA: 3'- gaCUCGGGGCaACUUG-GGUuUCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 69489 | 0.66 | 0.995412 |
Target: 5'- aCUGGGCCCCa--GAACCCucuuuaGGUGg -3' miRNA: 3'- -GACUCGGGGcaaCUUGGGuuuc--UUAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 67907 | 0.73 | 0.851385 |
Target: 5'- aCUGGGCCUCGUgGGAgCCGAAGGu-- -3' miRNA: 3'- -GACUCGGGGCAaCUUgGGUUUCUuac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 67569 | 0.69 | 0.97227 |
Target: 5'- -cGAGCCCCccuccccguacucGUgGGACCCGgaccccGAGGAUGg -3' miRNA: 3'- gaCUCGGGG-------------CAaCUUGGGU------UUCUUAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 58825 | 0.66 | 0.994653 |
Target: 5'- -aGAGCCCCGUgaaGAuGCCCGGGc---- -3' miRNA: 3'- gaCUCGGGGCAa--CU-UGGGUUUcuuac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 57523 | 0.68 | 0.986086 |
Target: 5'- -gGGGCCCCGcc---CCCAGAGAGc- -3' miRNA: 3'- gaCUCGGGGCaacuuGGGUUUCUUac -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 54664 | 0.67 | 0.990545 |
Target: 5'- -gGGGCCCCGUcguaGAccuCCCAGAcGGUGg -3' miRNA: 3'- gaCUCGGGGCAa---CUu--GGGUUUcUUAC- -5' |
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28992 | 3' | -50.4 | NC_006146.1 | + | 54136 | 0.68 | 0.986086 |
Target: 5'- gUGAGCCCCugcGUccGGACCuCGAGGAGc- -3' miRNA: 3'- gACUCGGGG---CAa-CUUGG-GUUUCUUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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