miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28992 3' -50.4 NC_006146.1 + 13334 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 15907 0.69 0.975296
Target:  5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 22062 0.69 0.975296
Target:  5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 5202 0.66 0.99718
Target:  5'- cCUGGGCCUgGggGAGCU--AGGggUGc -3'
miRNA:   3'- -GACUCGGGgCaaCUUGGguUUCuuAC- -5'
28992 3' -50.4 NC_006146.1 + 25646 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 28724 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 168814 0.76 0.709717
Target:  5'- -gGAGCCCCGggGcGGCCCGGGGAc-- -3'
miRNA:   3'- gaCUCGGGGCaaC-UUGGGUUUCUuac -5'
28992 3' -50.4 NC_006146.1 + 169746 0.76 0.709717
Target:  5'- -gGAGCCCCGggGcGGCCCGGGGAc-- -3'
miRNA:   3'- gaCUCGGGGCaaC-UUGGGUUUCUuac -5'
28992 3' -50.4 NC_006146.1 + 52272 0.72 0.889431
Target:  5'- aCUGGGCCCCGggc-GCCCccacguacuGGAGGAUGu -3'
miRNA:   3'- -GACUCGGGGCaacuUGGG---------UUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 12828 0.69 0.975296
Target:  5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 143290 0.7 0.951406
Target:  5'- cCUG-GCCaCCcagUGGACCCGGAGAGUc -3'
miRNA:   3'- -GACuCGG-GGca-ACUUGGGUUUCUUAc -5'
28992 3' -50.4 NC_006146.1 + 67907 0.73 0.851385
Target:  5'- aCUGGGCCUCGUgGGAgCCGAAGGu-- -3'
miRNA:   3'- -GACUCGGGGCAaCUUgGGUUUCUuac -5'
28992 3' -50.4 NC_006146.1 + 16412 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 44273 0.7 0.963027
Target:  5'- -cGGGCCCCGggGuguGCCCAccGAc-- -3'
miRNA:   3'- gaCUCGGGGCaaCu--UGGGUuuCUuac -5'
28992 3' -50.4 NC_006146.1 + 19490 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 159021 0.75 0.78942
Target:  5'- -cGGGCCCCGUUGGugCCAGu----- -3'
miRNA:   3'- gaCUCGGGGCAACUugGGUUucuuac -5'
28992 3' -50.4 NC_006146.1 + 105876 0.69 0.972555
Target:  5'- gUGGGCCCUG--GGACCguaGAAGAGUGc -3'
miRNA:   3'- gACUCGGGGCaaCUUGGg--UUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 18984 0.69 0.975296
Target:  5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 22568 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 167882 0.76 0.709717
Target:  5'- -gGAGCCCCGggGcGGCCCGGGGAc-- -3'
miRNA:   3'- gaCUCGGGGCaaC-UUGGGUUUCUuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.