miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28992 3' -50.4 NC_006146.1 + 52272 0.72 0.889431
Target:  5'- aCUGGGCCCCGggc-GCCCccacguacuGGAGGAUGu -3'
miRNA:   3'- -GACUCGGGGCaacuUGGG---------UUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 25646 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 151067 0.67 0.992831
Target:  5'- gCUGAGguCCCUGaUGAGCUgGAAGAAg- -3'
miRNA:   3'- -GACUC--GGGGCaACUUGGgUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 18984 0.69 0.975296
Target:  5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 22568 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 34145 0.67 0.99175
Target:  5'- -cGGGCCUCccgGAGCCCcggcGAGggUGg -3'
miRNA:   3'- gaCUCGGGGcaaCUUGGGu---UUCuuAC- -5'
28992 3' -50.4 NC_006146.1 + 19490 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 16412 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 22062 0.69 0.975296
Target:  5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 50198 0.66 0.99608
Target:  5'- -cGGGCUCgGguaGGCCCGGGGggUGa -3'
miRNA:   3'- gaCUCGGGgCaacUUGGGUUUCuuAC- -5'
28992 3' -50.4 NC_006146.1 + 169746 0.76 0.709717
Target:  5'- -gGAGCCCCGggGcGGCCCGGGGAc-- -3'
miRNA:   3'- gaCUCGGGGCaaC-UUGGGUUUCUuac -5'
28992 3' -50.4 NC_006146.1 + 28724 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 170570 0.68 0.987722
Target:  5'- ---uGCuCCCGUUG-GCCgGGAGAAUGa -3'
miRNA:   3'- gacuCG-GGGCAACuUGGgUUUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 97313 0.67 0.993795
Target:  5'- ---uGCCCCG-UGAGCUCGaccggaggaGAGGAUGg -3'
miRNA:   3'- gacuCGGGGCaACUUGGGU---------UUCUUAC- -5'
28992 3' -50.4 NC_006146.1 + 25722 0.67 0.989205
Target:  5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 22644 0.67 0.989205
Target:  5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 168952 0.69 0.972555
Target:  5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3'
miRNA:   3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5'
28992 3' -50.4 NC_006146.1 + 169684 0.67 0.993795
Target:  5'- -cGGGCCCCGcgGGACCCc------- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGuuucuuac -5'
28992 3' -50.4 NC_006146.1 + 27381 0.69 0.977832
Target:  5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5'
28992 3' -50.4 NC_006146.1 + 168020 0.69 0.972555
Target:  5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3'
miRNA:   3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.