miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28992 5' -69.1 NC_006146.1 + 52527 0.65 0.379244
Target:  5'- cGCCGCCC-CGGgcaccccGGCCCacgucAGGGUCagcaCCUAc -3'
miRNA:   3'- -CGGCGGGaGCC-------CCGGG-----UCCCGG----GGAU- -5'
28992 5' -69.1 NC_006146.1 + 67979 0.66 0.372475
Target:  5'- gGCaGCCCacgaucUUGGGGCgCAGccacgccacacGGCCCCUGg -3'
miRNA:   3'- -CGgCGGG------AGCCCCGgGUC-----------CCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 43487 0.66 0.372475
Target:  5'- gGCCGUugacaccggcuCCggcggCGGGGCCCA--GCCCCa- -3'
miRNA:   3'- -CGGCG-----------GGa----GCCCCGGGUccCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 169688 0.66 0.372475
Target:  5'- cCCGCCCcCGGGucuuCCCGGGcucCCCCUc -3'
miRNA:   3'- cGGCGGGaGCCCc---GGGUCCc--GGGGAu -5'
28992 5' -69.1 NC_006146.1 + 167824 0.66 0.372475
Target:  5'- cCCGCCCcCGGGucuuCCCGGGcucCCCCUc -3'
miRNA:   3'- cGGCGGGaGCCCc---GGGUCCc--GGGGAu -5'
28992 5' -69.1 NC_006146.1 + 169270 0.66 0.372475
Target:  5'- gGCCgggGCCUggcgGGGGCCagcgCGGGGUCCCg- -3'
miRNA:   3'- -CGG---CGGGag--CCCCGG----GUCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 170201 0.66 0.372475
Target:  5'- gGCCgggGCCUggcgGGGGCCagcgCGGGGUCCCg- -3'
miRNA:   3'- -CGG---CGGGag--CCCCGG----GUCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 167406 0.66 0.372475
Target:  5'- gGCCgggGCCUggcgGGGGCCagcgCGGGGUCCCg- -3'
miRNA:   3'- -CGG---CGGGag--CCCCGG----GUCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 170620 0.66 0.372475
Target:  5'- cCCGCCCcCGGGucuuCCCGGGcucCCCCUc -3'
miRNA:   3'- cGGCGGGaGCCCc---GGGUCCc--GGGGAu -5'
28992 5' -69.1 NC_006146.1 + 168756 0.66 0.372475
Target:  5'- cCCGCCCcCGGGucuuCCCGGGcucCCCCUc -3'
miRNA:   3'- cGGCGGGaGCCCc---GGGUCCc--GGGGAu -5'
28992 5' -69.1 NC_006146.1 + 69821 0.66 0.372475
Target:  5'- aGCCGCCCccaguacccCGGGGaCguGGGCCUg-- -3'
miRNA:   3'- -CGGCGGGa--------GCCCCgGguCCCGGGgau -5'
28992 5' -69.1 NC_006146.1 + 98456 0.66 0.372475
Target:  5'- cGCCGCCCg-GGGGCCagucucuGGGUcagUCCg- -3'
miRNA:   3'- -CGGCGGGagCCCCGGgu-----CCCG---GGGau -5'
28992 5' -69.1 NC_006146.1 + 168338 0.66 0.372475
Target:  5'- gGCCgggGCCUggcgGGGGCCagcgCGGGGUCCCg- -3'
miRNA:   3'- -CGG---CGGGag--CCCCGG----GUCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 46629 0.66 0.365789
Target:  5'- cGCCGCCUUCcugGGGGCCCccucguucuacgcgGGacucggccuggucucGGCCCUg- -3'
miRNA:   3'- -CGGCGGGAG---CCCCGGG--------------UC---------------CCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 54908 0.66 0.365051
Target:  5'- gGCCGCCCUgacCcGGGCCCGccGuCCCCUc -3'
miRNA:   3'- -CGGCGGGA---GcCCCGGGUccC-GGGGAu -5'
28992 5' -69.1 NC_006146.1 + 104389 0.66 0.365051
Target:  5'- uGCgGCCCcgUgGGGGCgCAGacGGCCCUg- -3'
miRNA:   3'- -CGgCGGG--AgCCCCGgGUC--CCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 89983 0.66 0.365051
Target:  5'- cUCGUCCUCGuccacGGCCauGGGCCCCUc -3'
miRNA:   3'- cGGCGGGAGCc----CCGGguCCCGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 30372 0.66 0.365051
Target:  5'- uGCCGuCCCUCccaGGGCUagguuugcugUAGGGCCgCCa- -3'
miRNA:   3'- -CGGC-GGGAGc--CCCGG----------GUCCCGG-GGau -5'
28992 5' -69.1 NC_006146.1 + 85595 0.66 0.365051
Target:  5'- aGCCGCCCgccUCGGaagcuGGCaCCGGGGCaaagggCCa- -3'
miRNA:   3'- -CGGCGGG---AGCC-----CCG-GGUCCCGg-----GGau -5'
28992 5' -69.1 NC_006146.1 + 99234 0.66 0.365051
Target:  5'- cCCGCC----GGGCCCuggGGGGCCUCUAc -3'
miRNA:   3'- cGGCGGgagcCCCGGG---UCCCGGGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.