miRNA display CGI


Results 41 - 60 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28992 5' -69.1 NC_006146.1 + 89983 0.66 0.365051
Target:  5'- cUCGUCCUCGuccacGGCCauGGGCCCCUc -3'
miRNA:   3'- cGGCGGGAGCc----CCGGguCCCGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 54908 0.66 0.365051
Target:  5'- gGCCGCCCUgacCcGGGCCCGccGuCCCCUc -3'
miRNA:   3'- -CGGCGGGA---GcCCCGGGUccC-GGGGAu -5'
28992 5' -69.1 NC_006146.1 + 104389 0.66 0.365051
Target:  5'- uGCgGCCCcgUgGGGGCgCAGacGGCCCUg- -3'
miRNA:   3'- -CGgCGGG--AgCCCCGgGUC--CCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 99234 0.66 0.365051
Target:  5'- cCCGCC----GGGCCCuggGGGGCCUCUAc -3'
miRNA:   3'- cGGCGGgagcCCCGGG---UCCCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 46629 0.66 0.365789
Target:  5'- cGCCGCCUUCcugGGGGCCCccucguucuacgcgGGacucggccuggucucGGCCCUg- -3'
miRNA:   3'- -CGGCGGGAG---CCCCGGG--------------UC---------------CCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 16208 0.66 0.350512
Target:  5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3'
miRNA:   3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5'
28992 5' -69.1 NC_006146.1 + 19286 0.66 0.350512
Target:  5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3'
miRNA:   3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5'
28992 5' -69.1 NC_006146.1 + 168829 0.66 0.33639
Target:  5'- -gCGCgCUCGGGcCCCGGGgaaGCCCCc- -3'
miRNA:   3'- cgGCGgGAGCCCcGGGUCC---CGGGGau -5'
28992 5' -69.1 NC_006146.1 + 167897 0.66 0.33639
Target:  5'- -gCGCgCUCGGGcCCCGGGgaaGCCCCc- -3'
miRNA:   3'- cgGCGgGAGCCCcGGGUCC---CGGGGau -5'
28992 5' -69.1 NC_006146.1 + 54441 0.66 0.33639
Target:  5'- cCCGCCUgacCGGGgccGCCCAGaGGCUCUg- -3'
miRNA:   3'- cGGCGGGa--GCCC---CGGGUC-CCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 169933 0.66 0.343399
Target:  5'- gGCCGCCC-CGGGGCUC----CCCCg- -3'
miRNA:   3'- -CGGCGGGaGCCCCGGGucccGGGGau -5'
28992 5' -69.1 NC_006146.1 + 169001 0.66 0.343399
Target:  5'- gGCCGCCC-CGGGGCUC----CCCCg- -3'
miRNA:   3'- -CGGCGGGaGCCCCGGGucccGGGGau -5'
28992 5' -69.1 NC_006146.1 + 168069 0.66 0.343399
Target:  5'- gGCCGCCC-CGGGGCUC----CCCCg- -3'
miRNA:   3'- -CGGCGGGaGCCCCGGGucccGGGGau -5'
28992 5' -69.1 NC_006146.1 + 44905 0.66 0.343399
Target:  5'- gGCCGgCCagCGGGGgCCAcGGCCaCCg- -3'
miRNA:   3'- -CGGCgGGa-GCCCCgGGUcCCGG-GGau -5'
28992 5' -69.1 NC_006146.1 + 160635 0.66 0.350512
Target:  5'- cGCCGCCUUCgugauGGGGgCCAccGCCCaCUAc -3'
miRNA:   3'- -CGGCGGGAG-----CCCCgGGUccCGGG-GAU- -5'
28992 5' -69.1 NC_006146.1 + 126609 0.66 0.350512
Target:  5'- cUCGCCauCUCGuucgcggagaGGGCgCAGaGGCCCCUGg -3'
miRNA:   3'- cGGCGG--GAGC----------CCCGgGUC-CCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 57543 0.66 0.350512
Target:  5'- aGCCuCCCUCaccgacaCCCGGGGCCCCg- -3'
miRNA:   3'- -CGGcGGGAGcccc---GGGUCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 28519 0.66 0.350512
Target:  5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3'
miRNA:   3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5'
28992 5' -69.1 NC_006146.1 + 25441 0.66 0.350512
Target:  5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3'
miRNA:   3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5'
28992 5' -69.1 NC_006146.1 + 22364 0.66 0.350512
Target:  5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3'
miRNA:   3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.