Results 21 - 40 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28992 | 5' | -69.1 | NC_006146.1 | + | 137207 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 137021 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 135999 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 135906 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 136371 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 135349 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 136092 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 135442 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 135535 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 135628 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 136278 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 136464 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 136928 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 136835 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 137114 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 136650 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 137393 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 136557 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 136185 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 135256 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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