miRNA display CGI


Results 41 - 60 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28992 5' -69.1 NC_006146.1 + 159270 0.75 0.080607
Target:  5'- cGCCGCCa-CGcGGGCCuCGGGGCCCUc- -3'
miRNA:   3'- -CGGCGGgaGC-CCCGG-GUCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 157770 0.75 0.084651
Target:  5'- uGCUcUCCUCGuGGGCCCGGGaGCCCCc- -3'
miRNA:   3'- -CGGcGGGAGC-CCCGGGUCC-CGGGGau -5'
28992 5' -69.1 NC_006146.1 + 138066 0.75 0.088889
Target:  5'- uGCCgGCCCggggCGGGGCCCGGGacacGCCCa-- -3'
miRNA:   3'- -CGG-CGGGa---GCCCCGGGUCC----CGGGgau -5'
28992 5' -69.1 NC_006146.1 + 52112 0.75 0.091083
Target:  5'- gGCCGCCCgUCGGuGCCuCGGaGGCCCCc- -3'
miRNA:   3'- -CGGCGGG-AGCCcCGG-GUC-CCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 117533 0.73 0.110568
Target:  5'- cGCCucuCCCUCGGGGCCU-GGGCCgCa- -3'
miRNA:   3'- -CGGc--GGGAGCCCCGGGuCCCGGgGau -5'
28992 5' -69.1 NC_006146.1 + 164664 0.73 0.113263
Target:  5'- gGCCauguggGCCCU-GGGGUCCauGGGGCCCCa- -3'
miRNA:   3'- -CGG------CGGGAgCCCCGGG--UCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 56339 0.73 0.114358
Target:  5'- gGCCGCggggagggcucucggUCUCGGGGCCCGcGGCCaCCUu -3'
miRNA:   3'- -CGGCG---------------GGAGCCCCGGGUcCCGG-GGAu -5'
28992 5' -69.1 NC_006146.1 + 33308 0.73 0.116019
Target:  5'- cGCCGCCgCUCgguccuGGGGCuCCGGGGUCCg-- -3'
miRNA:   3'- -CGGCGG-GAG------CCCCG-GGUCCCGGGgau -5'
28992 5' -69.1 NC_006146.1 + 57015 0.73 0.116019
Target:  5'- gGCCG-CCUCGGGGgCCAGaaGCCCCg- -3'
miRNA:   3'- -CGGCgGGAGCCCCgGGUCc-CGGGGau -5'
28992 5' -69.1 NC_006146.1 + 94503 0.73 0.118837
Target:  5'- cGCCGCCgUCGGcGCCCccGGUCCCUc -3'
miRNA:   3'- -CGGCGGgAGCCcCGGGucCCGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 169440 0.73 0.118837
Target:  5'- cCCGCCCUCGGGaGCCCccucaGCCCCc- -3'
miRNA:   3'- cGGCGGGAGCCC-CGGGucc--CGGGGau -5'
28992 5' -69.1 NC_006146.1 + 170371 0.73 0.118837
Target:  5'- cCCGCCCUCGGGaGCCCccucaGCCCCc- -3'
miRNA:   3'- cGGCGGGAGCCC-CGGGucc--CGGGGau -5'
28992 5' -69.1 NC_006146.1 + 167576 0.73 0.118837
Target:  5'- cCCGCCCUCGGGaGCCCccucaGCCCCc- -3'
miRNA:   3'- cGGCGGGAGCCC-CGGGucc--CGGGGau -5'
28992 5' -69.1 NC_006146.1 + 168508 0.73 0.118837
Target:  5'- cCCGCCCUCGGGaGCCCccucaGCCCCc- -3'
miRNA:   3'- cGGCGGGAGCCC-CGGGucc--CGGGGau -5'
28992 5' -69.1 NC_006146.1 + 151936 0.73 0.124666
Target:  5'- uGCCGCCCUCucuaGGGGCCgCuGGcGCCaCCa- -3'
miRNA:   3'- -CGGCGGGAG----CCCCGG-GuCC-CGG-GGau -5'
28992 5' -69.1 NC_006146.1 + 67352 0.73 0.127678
Target:  5'- aGCCcaUCCUCGGGGUCC-GGGUCCCa- -3'
miRNA:   3'- -CGGc-GGGAGCCCCGGGuCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 34056 0.72 0.13107
Target:  5'- uGCCGgCCgggggucccguggcaCGGGGCCgGGGGUCCCg- -3'
miRNA:   3'- -CGGCgGGa--------------GCCCCGGgUCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 33184 0.72 0.137125
Target:  5'- cGCCGCCgCUCGguccuGGGCCUccGGGuGCUCCUGg -3'
miRNA:   3'- -CGGCGG-GAGC-----CCCGGG--UCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 147989 0.72 0.142759
Target:  5'- uGCaugGCCCUCguGGGGCCUucccugcacauguuGGGGCCUCUGu -3'
miRNA:   3'- -CGg--CGGGAG--CCCCGGG--------------UCCCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 170696 0.72 0.143775
Target:  5'- cGCCGCgCgCUgGGGGUCCGGGGaagccCCCCg- -3'
miRNA:   3'- -CGGCG-G-GAgCCCCGGGUCCC-----GGGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.